hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-16424684/chunk_1/iprscan-20080810-16424684.nocrc
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Query sequence: fj15684
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00317                                                  93.9    1.9e-23   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00317    1/1     221   345 ..     1   114 []    93.9  1.9e-23

Alignments of top-scoring domains:
SM00317: domain 1 of 1, from 221 to 345: score 93.9, E = 1.9e-23
                   *->aklevfkskgkGwGlratedIpkGefIleyvGeii............
                         +v ++ ++ + lra++d++ ++ I+ey+G ++ +++ + +++  
     fj15684   221    QLGRVTRVQKHRKILRAARDLALDTLIIEYRGKVMlrqqfevnghff 267  

                   .....fylfd........ciDatranggkGniarfiNHSCePNcelifve
                   +++ +f+lf ++ ++ + c+Da+      Gn arfi++SC+PN+e+++++
     fj15684   268 kkpypFVLFYskfngvemCVDART----FGNDARFIRRSCTPNAEVRHMI 313  

                   vdgfdprgasdsadprivifAlrdIkpGEELtidYgddyege<-*
                    dg           ++++i+A   I ++ E+ti ++++y ++   
     fj15684   314 ADG----------MIHLCIYAVSAITKDAEVTIAFDYEYSNC    345  

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