hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-16484014/chunk_1/iprscan-20080810-16484014.nocrc
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Query sequence: fj15762
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08416.3.ls Phosphotyrosine-binding domain                 270.7    2.7e-78   1
PF08416.3.fs Phosphotyrosine-binding domain                 268.8      1e-77   1
PF00017.14.fs SH2 domain                                      39.7    4.1e-13   1
PF00017.14.ls SH2 domain                                      41.7    2.4e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00017.14.fs   1/1     601   695 ..     1    82 []    39.7  4.1e-13
PF00017.14.ls   1/1     601   695 ..     1    82 []    41.7  2.4e-09
PF08416.3.fs   1/1     736   872 ..     1   145 []   268.8    1e-77
PF08416.3.ls   1/1     736   872 ..     1   145 []   270.7  2.7e-78

Alignments of top-scoring domains:
PF00017.14.fs: domain 1 of 1, from 601 to 695: score 39.7, E = 4.1e-13
                   *->WyhGkIsRkeAErlLlnpggkdGtFLvReSestpGdYtLSVrddgp.
                      Wy + IsR++A  lL+   +++G+F++R+S s  G Y L  +  +p+
     fj15762   601    WYKPEISREQAIALLKD--QEPGAFIIRDSHSFRGAYGLAMKVSSPp 645  

                   ............qgdrVkHyrIqsldng.gyyitggvk.FssLpeLvehY
                   ++  +++++++ + + V+H+ I + ++g ++    ++ +F+sL+ Lv+ +
     fj15762   646 ptimqqnkkgdmTHELVRHFLIETGPRGvKLKGCPNEPnFGSLSALVYQH 695  

                   <-*
                      
     fj15762     -     -    

PF00017.14.ls: domain 1 of 1, from 601 to 695: score 41.7, E = 2.4e-09
                   *->WyhGkIsRkeAErlLlnpggkdGtFLvReSestpGdYtLSVrddgp.
                      Wy + IsR++A  lL+   +++G+F++R+S s  G Y L  +  +p+
     fj15762   601    WYKPEISREQAIALLKD--QEPGAFIIRDSHSFRGAYGLAMKVSSPp 645  

                   ............qgdrVkHyrIqsldng.gyyitggvk.FssLpeLvehY
                   ++  +++++++ + + V+H+ I + ++g ++    ++ +F+sL+ Lv+ +
     fj15762   646 ptimqqnkkgdmTHELVRHFLIETGPRGvKLKGCPNEPnFGSLSALVYQH 695  

                   <-*
                      
     fj15762     -     -    

PF08416.3.fs: domain 1 of 1, from 736 to 872: score 268.8, E = 1e-77
                   *->QyrVeHLfTfdldsltGvqaVeDaiakLqlLdakGrvwpQdvlLqVs
                      +++V++++++d++sltG+qa+++  a++++L+a++ + ++ v+++Vs
     fj15762   736    ACNVLFVNSVDMESLTGPQAISK--ATSETLAADPTPAATIVHFKVS 780  

                   dqgitLtDnerKeeLREhypLnsirfcqavlndrrynStsdgddiiAssr
                   +qgitLtDn+rK+++R+hypLn+++fc++++++r++++t++g+    +++
     fj15762   781 AQGITLTDNQRKLFFRRHYPLNTVTFCDLDPQERKWMKTEGGA----PAK 826  

                   lLafVaqepgqskpnvCHlFqCdEleAeqpasdIesalskvllgkkkr<-
                   l++fVa+++g+ ++n+CHlF+  El+++qpas+I++++skv+l+ +++  
     fj15762   827 LFGFVARKQGSTTDNACHLFA--ELDPNQPASAIVNFVSKVMLNAGQK   872  

                   *
                    
     fj15762     -   -    

PF08416.3.ls: domain 1 of 1, from 736 to 872: score 270.7, E = 2.7e-78
                   *->QyrVeHLfTfdldsltGvqaVeDaiakLqlLdakGrvwpQdvlLqVs
                      +++V++++++d++sltG+qa+++  a++++L+a++ + ++ v+++Vs
     fj15762   736    ACNVLFVNSVDMESLTGPQAISK--ATSETLAADPTPAATIVHFKVS 780  

                   dqgitLtDnerKeeLREhypLnsirfcqavlndrrynStsdgddiiAssr
                   +qgitLtDn+rK+++R+hypLn+++fc++++++r++++t++g+    +++
     fj15762   781 AQGITLTDNQRKLFFRRHYPLNTVTFCDLDPQERKWMKTEGGA----PAK 826  

                   lLafVaqepgqskpnvCHlFqCdEleAeqpasdIesalskvllgkkkr<-
                   l++fVa+++g+ ++n+CHlF+  El+++qpas+I++++skv+l+ +++  
     fj15762   827 LFGFVARKQGSTTDNACHLFA--ELDPNQPASAIVNFVSKVMLNAGQK   872  

                   *
                    
     fj15762     -   -    

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