hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-16484014/chunk_1/iprscan-20080810-16484014.nocrc
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Query sequence: fj15762
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00462                                                 112.0    6.5e-29   1
SM00252                                                  69.4    4.4e-16   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00252    1/1     599   701 ..     1    87 []    69.4  4.4e-16
SM00462    1/1     732   873 .]     1   156 []   112.0  6.5e-29

Alignments of top-scoring domains:
SM00252: domain 1 of 1, from 599 to 701: score 69.4, E = 4.4e-16
                   *->epWYHGkisReeAEklLkneggpdGtFLvRdSesspgdyvLSvrvk.
                        WY   isRe+A +lLk   +++G+F++RdS s++g+y L ++v +
     fj15762   599    KYWYKPEISREQAIALLKD--QEPGAFIIRDSHSFRGAYGLAMKVSs 643  

                   ................gkvkHyrIrrtddgkfylggt.prrkFpsL.eLv
                   ++++  +++++++ +++ v+H++I++ + +++ l g+++++ F sL+ Lv
     fj15762   644 ppptimqqnkkgdmthELVRHFLIETGP-RGVKLKGCpNEPNFGSLsALV 692  

                   ehYqknslg<-*
                     ++  +l    
     fj15762   693 YQHSIIPLA    701  

SM00462: domain 1 of 1, from 732 to 873: score 112.0, E = 6.5e-29
                   *->segvsfeVkYLGsvevpearkSlapgkglqvlqeairklr..sekkk
                       +g++++V+++ sv++++ +       g+q++ +a ++      +++
     fj15762   732    KQGAACNVLFVNSVDMESLT-------GPQAISKATSETLaaDPTPA 771  

                   pqkvilsvSsdgvklidektk.qvlaehplrrIsfcaadpq.r.w.nt.G
                    + v+++vS +g++l+d+++k ++++++pl++++fc  dpq+r+w +t+G
     fj15762   772 ATIVHFKVSAQGITLTDNQRKlFFRRHYPLNTVTFCDLDPQeRkWmKTeG 821  

                   gdgstdddrvFgyiardpgssgSnrgtsrfaCHVFrcekaaaedialaig
                   g    + +++Fg++ar++gs      t+ +aCH+F   +++   ++++++
     fj15762   822 G----APAKLFGFVARKQGS------TTDNACHLFAELDPN---QPASAI 858  

                   qaFqvayelklkarse<-*
                    +F  +++l + +++    
     fj15762   859 VNFVSKVMLNAGQKR-    873  

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