hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-16545763/chunk_1/iprscan-20080810-16545763.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj15811 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00616.9.ls GTPase-activator protein for Ras-like GTPase 237.0 3.8e-68 1 PF03836.5.ls RasGAP C-terminus 236.2 6.5e-68 1 PF00616.9.fs GTPase-activator protein for Ras-like GTPase 235.0 1.5e-67 1 PF03836.5.fs RasGAP C-terminus 234.3 2.4e-67 1 PF00612.17.fs IQ calmodulin-binding motif 60.7 4.6e-17 3 PF00612.17.ls IQ calmodulin-binding motif 66.7 7e-17 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00612.17.fs 1/3 271 291 .. 1 21 [] 23.3 7e-06 PF00612.17.ls 1/3 271 291 .. 1 21 [] 25.3 0.0002 PF00612.17.ls 2/3 301 321 .. 1 21 [] 25.5 0.00017 PF00612.17.fs 2/3 301 321 .. 1 21 [] 23.5 6.2e-06 PF00612.17.ls 3/3 331 351 .. 1 21 [] 15.9 0.14 PF00616.9.ls 1/1 518 730 .. 1 200 [] 237.0 3.8e-68 PF00616.9.fs 1/1 518 730 .. 1 200 [] 235.0 1.5e-67 PF03836.5.fs 1/1 946 1081 .. 1 149 [] 234.3 2.4e-67 PF03836.5.ls 1/1 946 1081 .. 1 149 [] 236.2 6.5e-68 Alignments of top-scoring domains: PF00612.17.fs: domain 1 of 3, from 271 to 291: score 23.3, E = 7e-06 *->rraaikIQaawRGylaRkryk<-* ++ ++kIQa+w+Gy++Rk+y fj15811 271 EENVVKIQAFWKGYKQRKEYM 291 PF00612.17.ls: domain 1 of 3, from 271 to 291: score 25.3, E = 0.0002 *->rraaikIQaawRGylaRkryk<-* ++ ++kIQa+w+Gy++Rk+y fj15811 271 EENVVKIQAFWKGYKQRKEYM 291 PF00612.17.ls: domain 2 of 3, from 301 to 321: score 25.5, E = 0.00017 *->rraaikIQaawRGylaRkryk<-* +++++kIQ+++R+ aRk y fj15811 301 TDSIVKIQSWFRMATARKSYL 321 PF00612.17.fs: domain 2 of 3, from 301 to 321: score 23.5, E = 6.2e-06 *->rraaikIQaawRGylaRkryk<-* +++++kIQ+++R+ aRk y fj15811 301 TDSIVKIQSWFRMATARKSYL 321 PF00612.17.ls: domain 3 of 3, from 331 to 351: score 15.9, E = 0.14 *->rraaikIQaawRGylaRkryk<-* ++kIQ+ R+ +aR yk fj15811 331 NNEIVKIQSLLRANKARDDYK 351 PF00616.9.ls: domain 1 of 1, from 518 to 730: score 237.0, E = 3.8e-68 *->llsqlieeEieektsdpntlFRgNslatkllsaYlrr.vgqeYLkdt l++ ++eeEi++k ++++++ gN++++k++ +++r +gq+ L+++ fj15811 518 LFKTALEEEIKSKVDQVQDIVTGNPTVIKMVVSFNRGaRGQNTLRQL 564 LgplireiveskedlslElDPssklydgeineee.qtg.ps.lp...... L p+++ei+++k l ++++P +y+ + n+ e+qtg+ s+lp + +++ fj15811 565 LAPVVKEIIDDKS-LIINTNP-VEVYKAWVNQLEtQTGeASkLPydvtte 612 ...........leknlenLreycekfldaIisSvdklPpelryickqire + + ++ +++le ++enLr ++k+l++IisS+d lP++lryi+k++++ fj15811 613 qaltypevknkLEASIENLRRVTDKVLNSIISSLDLLPYGLRYIAKVLKN 662 svekkfpdakqdeaerlsavggflFLRFlfcPAivsPelfglveamvtss s+++kfpda++de l++vg++l++R+ ++PAiv+P+ f+++ ++ + fj15811 663 SIHEKFPDATEDEL--LKIVGNLLYYRY-MNPAIVAPDGFDII---DMTA 706 edhpsprarRnLtliaKvLQnlan<-* ++++ +rRnL ++aKvLQ++a+ fj15811 707 GGQINSDQRRNLGSVAKVLQHAAS 730 PF00616.9.fs: domain 1 of 1, from 518 to 730: score 235.0, E = 1.5e-67 *->llsqlieeEieektsdpntlFRgNslatkllsaYlrr.vgqeYLkdt l++ ++eeEi++k ++++++ gN++++k++ +++r +gq+ L+++ fj15811 518 LFKTALEEEIKSKVDQVQDIVTGNPTVIKMVVSFNRGaRGQNTLRQL 564 LgplireiveskedlslElDPssklydgeineee.qtg.ps.lp...... L p+++ei+++k l ++++P +y+ + n+ e+qtg+ s+lp + +++ fj15811 565 LAPVVKEIIDDKS-LIINTNP-VEVYKAWVNQLEtQTGeASkLPydvtte 612 ...........leknlenLreycekfldaIisSvdklPpelryickqire + + ++ +++le ++enLr ++k+l++IisS+d lP++lryi+k++++ fj15811 613 qaltypevknkLEASIENLRRVTDKVLNSIISSLDLLPYGLRYIAKVLKN 662 svekkfpdakqdeaerlsavggflFLRFlfcPAivsPelfglveamvtss s+++kfpda++de l++vg++l++R+ ++PAiv+P+ f+++ ++ + fj15811 663 SIHEKFPDATEDEL--LKIVGNLLYYRY-MNPAIVAPDGFDII---DMTA 706 edhpsprarRnLtliaKvLQnlan<-* ++++ +rRnL ++aKvLQ++a+ fj15811 707 GGQINSDQRRNLGSVAKVLQHAAS 730 PF03836.5.fs: domain 1 of 1, from 946 to 1081: score 234.3, E = 2.4e-67 *->sLkelkekilknlkeLEelGlvqseVkNkYqsfindIAldirNlrri +L+++k+ki++nl++LE++G+v+se NkYq+++n+IA+dirN+r++ fj15811 946 PLEQKKRKIQRNLRTLEQTGHVSSE--NKYQDILNEIAKDIRNQRIY 990 reqrkaEldalqqtlraLrekreyLdeqlarYgeYLktcletlqrAKDfk r+ rkaEl++lqqtl+aL++k+++++eq+++Y++Y+ktcl++l+r fj15811 991 RKLRKAELAKLQQTLNALNKKAAFYEEQINYYDTYIKTCLDNLKR----- 1035 tkkkskfkskkkevkkvrk.ekgskkksksvKysakkLhkkGVlleitgp k++++++k ++k+e++++k++k+vKy+a+kLh+kGVll+i+++ fj15811 1036 -------KNTRRSIKLDGKgEPKGAKRAKPVKYTAAKLHEKGVLLDIDDL 1078 qln<-* q+n fj15811 1079 QTN 1081 PF03836.5.ls: domain 1 of 1, from 946 to 1081: score 236.2, E = 6.5e-68 *->sLkelkekilknlkeLEelGlvqseVkNkYqsfindIAldirNlrri +L+++k+ki++nl++LE++G+v+se NkYq+++n+IA+dirN+r++ fj15811 946 PLEQKKRKIQRNLRTLEQTGHVSSE--NKYQDILNEIAKDIRNQRIY 990 reqrkaEldalqqtlraLrekreyLdeqlarYgeYLktcletlqrAKDfk r+ rkaEl++lqqtl+aL++k+++++eq+++Y++Y+ktcl++l+r fj15811 991 RKLRKAELAKLQQTLNALNKKAAFYEEQINYYDTYIKTCLDNLKR----- 1035 tkkkskfkskkkevkkvrk.ekgskkksksvKysakkLhkkGVlleitgp k++++++k ++k+e++++k++k+vKy+a+kLh+kGVll+i+++ fj15811 1036 -------KNTRRSIKLDGKgEPKGAKRAKPVKYTAAKLHEKGVLLDIDDL 1078 qln<-* q+n fj15811 1079 QTN 1081 //