hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-16545763/chunk_1/iprscan-20080810-16545763.nocrc
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Query sequence: fj15811
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00323                                                 440.2   1.1e-127   1
SM00015                                                  59.7    3.7e-13   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00015    1/3     269   291 ..     1    23 []    34.4  1.5e-05
SM00015    2/3     299   321 ..     1    23 []    16.3      4.3
SM00015    3/3     329   351 ..     1    23 []     9.0       37
SM00323    1/1     485   838 ..     1   390 []   440.2 1.1e-127

Alignments of top-scoring domains:
SM00015: domain 1 of 3, from 269 to 291: score 34.4, E = 1.5e-05
                   *->rleraAiiIQaawRGylaRkryk<-*
                      ++e+++++IQa+w Gy++Rk+y    
     fj15811   269    EQEENVVKIQAFWKGYKQRKEYM    291  

SM00015: domain 2 of 3, from 299 to 321: score 16.3, E = 4.3
                   *->rleraAiiIQaawRGylaRkryk<-*
                        + ++++IQ+++R+  aRk y    
     fj15811   299    DNTDSIVKIQSWFRMATARKSYL    321  

SM00015: domain 3 of 3, from 329 to 351: score 9.0, E = 37
                   *->rleraAiiIQaawRGylaRkryk<-*
                        +  +++IQ+  R  +aR  yk   
     fj15811   329    DHNNEIVKIQSLLRANKARDDYK    351  

SM00323: domain 1 of 1, from 485 to 838: score 440.2, E = 1.1e-127
                   *->lkqgelgslrlktvyttdfilpseaYeeLleLllesvdvepltasla
                      ++++++ +++++tv++t+++++s+++ee+l+L l++++   l++++ 
     fj15811   485    QMPQNKSTKFMDTVIFTLYNYASNQREEYLLLKLFKTA---LEEEIK 528  

                   saleevcsvldkdelAtkLvrlFlrrgrgkpfLraLidkEvertddpvnt
                   s +++v++ ++ +++++k+v  F+r  rg+++Lr+L+++ v++      +
     fj15811   529 SKVDQVQDIVTGNPTVIKMVVSFNRGARGQNTLRQLLAPVVKE-----II 573  

                   lFRgNsLatKsmevymklvGnqYLhttLkpvLkkiveekkescEvDPsKl
                   +++++ ++t+++evy ++v++ + +t++ + L++ v++++ +++++++K+
     fj15811   574 DDKSLIINTNPVEVYKAWVNQLETQTGEASKLPYDVTTEQ-ALTYPEVKN 622  

                   evndviSfgdpvegedletnlenLlqyverlfdaIinSsdrlPygLRdic
                                  +le+++enL++++++++++Ii+S+d lPygLR+i 
     fj15811   623 ---------------KLEASIENLRRVTDKVLNSIISSLDLLPYGLRYIA 657  

                   kqLrqaaekrFpsatqdvrykaVssFvFLRFfcPAIlSPklFnLvde...
                   k L+++++++Fp+at+d+ +k+V++++++R+++PAI+ P+ F+++d++ +
     fj15811   658 KVLKNSIHEKFPDATEDELLKIVGNLLYYRYMNPAIVAPDGFDIIDMtag 707  

                   .hpdpttrRtLtLiAKvlQnLANlsesksklfgsKEpwmeplfkndflkq
                   +++++++rR+L ++AKvlQ+ A+++      f+++++++ ++  n++l +
     fj15811   708 gQINSDQRRNLGSVAKVLQHAASNKL-----FEGENEHLSSM--NNYLSE 750  

                   hkdrvkdFLdelssvdepsesL.vdkveelptkskPVstisgrelsllHs
                   ++++++++++e ++v+ep+e++++dk+++l+t+skPV++is++e++ +Hs
     fj15811   751 TYQEFRKYFKEACNVPEPEEKFnMDKYTDLVTVSKPVIYISIEEIISTHS 800  

                   lllengdalkrkknnnrDHKAlgedpldkllfklryfrltthkltngk<-
                   llle++da+ ++kn          d l++ll +l ++++++ +l +g   
     fj15811   801 LLLEHQDAIAPEKN----------DLLSELLGSLGEVPTVESFLGEGA   838  

                   *
                    
     fj15811     -   -    

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