hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-17004267/chunk_1/iprscan-20080810-17004267.nocrc
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Query sequence: fj15818
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF01237.9.fs Oxysterol-binding protein                  151.4    1.3e-42   2
PF01237.9.ls Oxysterol-binding protein                   78.0    2.7e-20   1
PF00169.19.fs PH domain                                   55.2    2.4e-16   1
PF00169.19.ls PH domain                                   56.7    7.2e-14   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF00169.19.ls   1/1      84   180 ..     1    92 []    56.7  7.2e-14
PF00169.19.fs   1/1      88   180 ..     5    92 .]    55.2  2.4e-16
PF01237.9.ls   1/1     359   772 .]     1   440 []    78.0  2.7e-20
PF01237.9.fs   1/2     393   487 ..    37   130 ..    39.9  2.9e-11
PF01237.9.fs   2/2     528   748 ..   141   376 ..   111.5  2.2e-31

Alignments of top-scoring domains:
PF00169.19.ls: domain 1 of 1, from 84 to 180: score 56.7, E = 7.2e-14
                   *->vikeGwLlkkg.gkkswkkRyfvLfd..dvLlyykdkk...kkpkgs
                          G+L+k+++   +w+ R+fvL ++ + L+y+ ++++++ kp+g+
     fj15818    84    ENVYGYLMKYTnLVTGWQYRFFVLNNeaGLLEYFVNEQsrnQKPRGT 130  

                   ipLsgiqvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsa
                   + L g+ + + ++  + ++F +   ++e++ l+a++++er++Wv+ +q +
     fj15818   131 LQLAGAVISPSDE--DSHTFTVNAaSGEQYKLRATDAKERQHWVSRLQIC 178  

                   ir<-*
                        
     fj15818   179 TQ    180  

PF00169.19.fs: domain 1 of 1, from 88 to 180: score 55.2, E = 2.4e-16
                   *->GwLlkkg.gkkswkkRyfvLfd..dvLlyykdkk...kkpkgsipLs
                      G+L+k+++   +w+ R+fvL ++ + L+y+ ++++++ kp+g++ L 
     fj15818    88    GYLMKYTnLVTGWQYRFFVLNNeaGLLEYFVNEQsrnQKPRGTLQLA 134  

                   giqvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsair<-
                   g+ + + ++  + ++F +   ++e++ l+a++++er++Wv+ +q +    
     fj15818   135 GAVISPSDE--DSHTFTVNAaSGEQYKLRATDAKERQHWVSRLQICTQ   180  

                   *
                    
     fj15818     -   -    

PF01237.9.ls: domain 1 of 1, from 359 to 772: score 78.0, E = 2.7e-20
                   *->kSqhsSsssltsklkfilsepkdltrRldipeeslspisLwsisqlw
                       + +   + +   +      + ++++ l + ee +s ++L   sql+
     fj15818   359    GLLAREPEEINADDEIEDTCDHKEDD-LGAVEEQRS-VILHLLSQLK 403  

                   vGkdLskitlPvfinEpkSmLqrvtedleYpelLdkAaaredsltrWfly
                    G dL++  lP+fi+E+ S+L+   + +  p+l    +    +  r ++ 
     fj15818   404 LGMDLTRVVLPTFILEKRSLLEMYADFMSHPDLFIAITNGATAEDR-MIR 452  

                   vaastlssysettr..rvkKPlNPlLGEtFelkrendElpnkgq......
                   ++ ++l s++e+ ++   kKP NP+ GEtF   ++    + k +  ++  
     fj15818   453 FVEYYLTSFHEGRKgaIAKKPYNPIIGETFHCSWK----MPKSEvassvf 498  

                   ............................yrllsEQVSHHPPvsAffaesp
                   +++++++ +++ + ++++ ++ +++  + r+ +EQVSHHPPvs f+ae  
     fj15818   499 sssstqgvtnhaplsgesltqvgsdcytVRFVAEQVSHHPPVSGFYAECT 548  

                   kskwrvqgevqikskFlGkslavmkeGltvhtildikdingkpEtYtwtq
                   + k  v   v  kskFlG s+ v + G   ++ l  ++     E Yt + 
     fj15818   549 ERKMCVNAHVWTKSKFLGMSIGVTMVGE-GILSLLEHG-----EEYTFSL 592  

                   PnttveGILvGkpfvElSGdesvin.sstGdkcvIeFktkGyfSGkkdsf
                   P  +++ IL   p+vEl G++  +n  +tG+ + I F tk +  Gk  ++
     fj15818   593 PCAYARSILT-VPWVEL-GGKVSVNcAKTGYSASITFHTKPFYGGKLHRV 640  

                   kgrivkdpdgnkdKEkklytlsGkWndsmyikKvqsksegelflDahktp
                    ++++           +     G Wn    +   +   + +   D  k +
     fj15818   641 TAEVKHNITN-----TVVCRVQGEWN---SVLEFTYSNGETKYVDLTKLA 682  

                   healkvrpLeeqhelesrkaWkkvadalkvgnltvftktkneleerqRpl
                        vrpLe q ++esr++Wk v+d+l+   + ++t+ k  leerqR  
     fj15818   683 VTKKRVRPLEKQDPFESRRLWKNVTDSLRESEIDKATEHKHTLEERQRTE 732  

                   lkptesrgvedqralfkrledkedldkeekkekpeaddkerkqkgslyep
                    + + + g ++  ++f  + d+                            
     fj15818   733 ERHRTETGTPWKTKYFIKEGDG---------------------------W 755  

                   kwfvpsgqpvtdKeklyikarkeyWefrKk<-*
                   ++  p         ++ i+ ++           
     fj15818   756 VYHKP--------LWKIIPTTQPAE-----    772  

PF01237.9.fs: domain 1 of 2, from 393 to 487: score 39.9, E = 2.9e-11
                   *->pisLwsisqlwvGkdLskitlPvfinEpkSmLqrvtedleYpelLdk
                      +++L   sql+ G dL++  lP+fi+E+ S+L+   + +  p+l   
     fj15818   393    SVILHLLSQLKLGMDLTRVVLPTFILEKRSLLEMYADFMSHPDLFIA 439  

                   AaaredsltrWflyvaastlssysettr..rvkKPlNPlLGEtFelkre<
                    +    +  r ++ ++ ++l s++e+ ++   kKP NP+ GEtF   ++ 
     fj15818   440 ITNGATAEDR-MIRFVEYYLTSFHEGRKgaIAKKPYNPIIGETFHCSWK  487  

                   -*
                     
     fj15818     -    -    

PF01237.9.fs: domain 2 of 2, from 528 to 748: score 111.5, E = 2.2e-31
                   *->rllsEQVSHHPPvsAffaespkskwrvqgevqikskFlGkslavmke
                      r+ +EQVSHHPPvs f+ae  + k  v   v  kskFlG s+ v + 
     fj15818   528    RFVAEQVSHHPPVSGFYAECTERKMCVNAHVWTKSKFLGMSIGVTMV 574  

                   GltvhtildikdingkpEtYtwtqPnttveGILvGkpfvElSGdesvin.
                   G   ++ l  ++     E Yt + P  +++ IL   p+vEl G++  +n 
     fj15818   575 GE-GILSLLEHG-----EEYTFSLPCAYARSILT-VPWVEL-GGKVSVNc 616  

                   sstGdkcvIeFktkGyfSGkkdsfkgrivkdpdgnkdKEkklytlsGkWn
                    +tG+ + I F tk +  Gk  ++ ++++           +     G Wn
     fj15818   617 AKTGYSASITFHTKPFYGGKLHRVTAEVKHNITN-----TVVCRVQGEWN 661  

                   dsmyikKvqsksegelflDahktphealkvrpLeeqhelesrkaWkkvad
                       +   +   + +   D  k +     vrpLe q ++esr++Wk v+d
     fj15818   662 ---SVLEFTYSNGETKYVDLTKLAVTKKRVRPLEKQDPFESRRLWKNVTD 708  

                   alkvgnltvftktkneleerqRpllkptesrgvedqralf<-*
                   +l+   + ++t+ k  leerqR   + + + g ++  ++f   
     fj15818   709 SLRESEIDKATEHKHTLEERQRTEERHRTETGTPWKTKYF    748  

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