hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-17004267/chunk_1/iprscan-20080810-17004267.nocrc
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Query sequence: fj15818
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00233                                                  61.5    1.1e-13   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00233     1/1      84   182 ..     1    82 []    61.5  1.1e-13

Alignments of top-scoring domains:
SM00233: domain 1 of 1, from 84 to 182: score 61.5, E = 1.1e-13
                   *->vikeGwLlkks..k.swkkryfvLfn..gvLlyyksk.....kpkgs
                          G+L+k+++  ++w+ r+fvL n+ g L y+ +++++++kp+g+
     fj15818    84    ENVYGYLMKYTnlVtGWQYRFFVLNNeaGLLEYFVNEqsrnqKPRGT 130  

                   ipLsgcsvre.p....cFeivt.dr.tlllqAeseeereeWvealqsaia
                   + L g+ ++++++++++F++   +++ + l+A +++er+ Wv+ lq +++
     fj15818   131 LQLAGAVISPsDedshTFTVNAaSGeQYKLRATDAKERQHWVSRLQICTQ 180  

                   ka<-*
                   ++   
     fj15818   181 HH    182  

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