hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-17064910/chunk_1/iprscan-20080810-17064910.nocrc
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Query sequence: fj15819
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01485.11.fs IBR domain                                     112.9    8.8e-35   2
PF01485.11.ls IBR domain                                     108.8    1.5e-29   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01485.11.fs   1/2      33    95 ..     1    72 []   106.9  6.8e-33
PF01485.11.ls   1/1      33    95 ..     1    72 []   108.8  1.5e-29

Alignments of top-scoring domains:
PF01485.11.fs: domain 1 of 2, from 33 to 95: score 106.9, E = 6.8e-33
                   *->eKYerlllesyvesnkdlkwCPapdCsyivrvtdlssgskeepssrr
                      eKY+r+l+++yves+++l  CP++dC++++rv+        ep +rr
     fj15819    33    EKYRRYLFRDYVESHYQLQLCPGADCPMVIRVQ--------EPRARR 71   

                   veCskGCgfeFCfnCkeewHgplsC<-*
                   v+C++ C+++FCf+C++++H+p++C   
     fj15819    72 VQCNR-CNEVFCFKCRQMYHAPTDC    95   

PF01485.11.ls: domain 1 of 1, from 33 to 95: score 108.8, E = 1.5e-29
                   *->eKYerlllesyvesnkdlkwCPapdCsyivrvtdlssgskeepssrr
                      eKY+r+l+++yves+++l  CP++dC++++rv+        ep +rr
     fj15819    33    EKYRRYLFRDYVESHYQLQLCPGADCPMVIRVQ--------EPRARR 71   

                   veCskGCgfeFCfnCkeewHgplsC<-*
                   v+C++ C+++FCf+C++++H+p++C   
     fj15819    72 VQCNR-CNEVFCFKCRQMYHAPTDC    95   

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