hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-17183839/chunk_1/iprscan-20080810-17183839.nocrc
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Query sequence: fj15863
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02862.8.ls DDHD domain                                    390.3   2.7e-114   1
PF02862.8.fs DDHD domain                                    388.5   9.3e-114   1
PF00536.20.fs SAM domain (Sterile alpha motif)                59.5    6.8e-17   1
PF00536.20.ls SAM domain (Sterile alpha motif)                61.4    2.6e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00536.20.fs   1/1     645   706 ..     1    65 []    59.5  6.8e-17
PF00536.20.ls   1/1     645   706 ..     1    65 []    61.4  2.6e-15
PF02862.8.fs   1/1     782   992 ..     1   276 []   388.5 9.3e-114
PF02862.8.ls   1/1     782   992 ..     1   276 []   390.3 2.7e-114

Alignments of top-scoring domains:
PF00536.20.fs: domain 1 of 1, from 645 to 706: score 59.5, E = 6.8e-17
                   *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG
                      ++  + +++e Le++ l++Y ++F ++++id++ ll +t +DL+++G
     fj15863   645    ENEEVLTLQETLEALSLSEYFSTF-EKEKIDMESLLMCTVDDLKEMG 690  

                   vtllGHrkKIlssIqgLk<-*
                   +  lG+rkKI++ +++ k   
     fj15863   691 I-PLGPRKKIANFVEH-K    706  

PF00536.20.ls: domain 1 of 1, from 645 to 706: score 61.4, E = 2.6e-15
                   *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG
                      ++  + +++e Le++ l++Y ++F ++++id++ ll +t +DL+++G
     fj15863   645    ENEEVLTLQETLEALSLSEYFSTF-EKEKIDMESLLMCTVDDLKEMG 690  

                   vtllGHrkKIlssIqgLk<-*
                   +  lG+rkKI++ +++ k   
     fj15863   691 I-PLGPRKKIANFVEH-K    706  

PF02862.8.fs: domain 1 of 1, from 782 to 992: score 388.5, E = 9.3e-114
                   *->LdFkvenfFaiGSPlGlfltlRglkiGDRPEFPngdslDllvsrpaC
                      LdF++e+fFa+GSP+++flt+Rg           +d++D+++s+p+C
     fj15863   782    LDFEPEIFFALGSPIAMFLTIRG-----------VDRIDENYSLPTC 817  

                   kqfYNIFHPlDPvAYRLEPLvvpefsKhikPvkIphykgrkrLglelsep
                   k+f+NI+HPlDPvAYRLEP++vp+++  +k+v+Iph+kgrkrL+lel+e+
     fj15863   818 KGFFNIYHPLDPVAYRLEPMIVPDLD--LKAVLIPHHKGRKRLHLELKES 865  

                   ltrviadlpqnflsnlqssiksspvltsasgasrkneeeteevkestars
                   l+r+++dl+q f+s+l+s++++++++++a+++s++++ee+e+v+++    
     fj15863   866 LSRMGSDLKQGFISSLKSAWQTLNEFARAHTSSTQLQEELEKVANQ---- 911  

                   GCSPRmTpapeqtenltemliareeravesqpssfgrsSiektkStaslg
                               +++ +e+++ ++e++ves                    
     fj15863   912 ------------IKEEEEKQVVEAEKVVES-------------------- 929  

                   svnktvaenietapeaskeedlaikvlmskLngtkRIDYvLqePaallaf
                                p++sk+ed+ +kv  ++Lng++RIDYvLqe +++++f
     fj15863   930 -------------PDFSKDEDYLGKV--GMLNGGRRIDYVLQE-KPIESF 963  

                   nsYlsalksHasYWeSeDvAlFlLkeiyr<-*
                   n+Yl+al+sH++YWeSeD+Al+lLkeiyr   
     fj15863   964 NEYLFALQSHLCYWESEDTALLLLKEIYR    992  

PF02862.8.ls: domain 1 of 1, from 782 to 992: score 390.3, E = 2.7e-114
                   *->LdFkvenfFaiGSPlGlfltlRglkiGDRPEFPngdslDllvsrpaC
                      LdF++e+fFa+GSP+++flt+Rg           +d++D+++s+p+C
     fj15863   782    LDFEPEIFFALGSPIAMFLTIRG-----------VDRIDENYSLPTC 817  

                   kqfYNIFHPlDPvAYRLEPLvvpefsKhikPvkIphykgrkrLglelsep
                   k+f+NI+HPlDPvAYRLEP++vp+++  +k+v+Iph+kgrkrL+lel+e+
     fj15863   818 KGFFNIYHPLDPVAYRLEPMIVPDLD--LKAVLIPHHKGRKRLHLELKES 865  

                   ltrviadlpqnflsnlqssiksspvltsasgasrkneeeteevkestars
                   l+r+++dl+q f+s+l+s++++++++++a+++s++++ee+e+v+++    
     fj15863   866 LSRMGSDLKQGFISSLKSAWQTLNEFARAHTSSTQLQEELEKVANQ---- 911  

                   GCSPRmTpapeqtenltemliareeravesqpssfgrsSiektkStaslg
                               +++ +e+++ ++e++ves                    
     fj15863   912 ------------IKEEEEKQVVEAEKVVES-------------------- 929  

                   svnktvaenietapeaskeedlaikvlmskLngtkRIDYvLqePaallaf
                                p++sk+ed+ +kv  ++Lng++RIDYvLqe +++++f
     fj15863   930 -------------PDFSKDEDYLGKV--GMLNGGRRIDYVLQE-KPIESF 963  

                   nsYlsalksHasYWeSeDvAlFlLkeiyr<-*
                   n+Yl+al+sH++YWeSeD+Al+lLkeiyr   
     fj15863   964 NEYLFALQSHLCYWESEDTALLLLKEIYR    992  

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