# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofj15904.fasta.nr -Q fj15904.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fj15904, 112 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6842980 sequences Expectation_n fit: rho(ln(x))= 4.8094+/-0.000179; mu= 6.5462+/- 0.010 mean_var=62.4231+/-12.584, 0's: 45 Z-trim: 48 B-trim: 2930 in 1/64 Lambda= 0.162331 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62088060|dbj|BAD92477.1| glia maturation factor ( 112) 729 178.3 1.8e-43 gi|73963887|ref|XP_853603.1| PREDICTED: similar to ( 101) 593 146.4 6.4e-34 gi|148688775|gb|EDL20722.1| glia maturation factor ( 179) 461 115.7 2e-24 gi|109083702|ref|XP_001085066.1| PREDICTED: glia m ( 142) 438 110.3 7e-23 gi|75054815|sp|Q5R6P6.3|GMFB_PONAB Glia maturation ( 142) 438 110.3 7e-23 gi|60831667|gb|AAX36979.1| glia maturation factor ( 143) 438 110.3 7.1e-23 gi|114653099|ref|XP_001160598.1| PREDICTED: glia m ( 154) 438 110.3 7.5e-23 gi|13529185|gb|AAH05359.1| GMFB protein [Homo sapi ( 154) 438 110.3 7.5e-23 gi|30583795|gb|AAP36146.1| Homo sapiens glia matur ( 155) 438 110.3 7.5e-23 gi|10764635|gb|AAG22803.1|AF297220_1 glia maturati ( 142) 431 108.6 2.2e-22 gi|119601045|gb|EAW80639.1| glia maturation factor ( 67) 427 107.4 2.3e-22 gi|2842657|sp|Q63228|GMFB_RAT Glia maturation fact ( 142) 429 108.1 3e-22 gi|53133884|emb|CAG32271.1| hypothetical protein [ ( 142) 428 107.9 3.6e-22 gi|29165811|gb|AAH49134.1| Glia maturation factor, ( 143) 427 107.7 4.2e-22 gi|46576640|sp|Q9CQI3|GMFB_MOUSE Glia maturation f ( 142) 426 107.4 4.9e-22 gi|159163204|pdb|1V6F|A Chain A, Solution Structur ( 151) 426 107.5 5.2e-22 gi|126283059|ref|XP_001378939.1| PREDICTED: hypoth ( 143) 423 106.7 8.1e-22 gi|149410527|ref|XP_001515691.1| PREDICTED: hypoth ( 146) 408 103.2 9.4e-21 gi|89269874|emb|CAJ83761.1| glia maturation factor ( 142) 395 100.2 7.6e-20 gi|54311401|gb|AAH84826.1| LOC495362 protein [Xeno ( 142) 386 98.1 3.3e-19 gi|47221301|emb|CAG13237.1| unnamed protein produc ( 141) 372 94.8 3.1e-18 gi|29179458|gb|AAH49318.1| Glia maturation factor, ( 142) 366 93.4 8.4e-18 gi|60649474|gb|AAH91700.1| Gmfg protein [Xenopus t ( 142) 358 91.5 3.1e-17 gi|73947678|ref|XP_853348.1| PREDICTED: similar to ( 142) 351 89.9 9.6e-17 gi|149722112|ref|XP_001497939.1| PREDICTED: simila ( 142) 347 88.9 1.8e-16 gi|114677156|ref|XP_001135638.1| PREDICTED: glia m ( 138) 346 88.7 2.1e-16 gi|6831548|sp|O60234|GMFG_HUMAN Glia maturation fa ( 142) 346 88.7 2.2e-16 gi|46250344|gb|AAH68858.1| MGC82225 protein [Xenop ( 142) 346 88.7 2.2e-16 gi|19697925|dbj|BAB86591.1| glia maturation factor ( 142) 346 88.7 2.2e-16 gi|60834147|gb|AAX37081.1| glia maturation factor ( 143) 346 88.7 2.2e-16 gi|73947676|ref|XP_867210.1| PREDICTED: similar to ( 167) 344 88.3 3.4e-16 gi|46576201|sp|Q80T18|GMFG_RAT Glia maturation fac ( 142) 342 87.8 4.1e-16 gi|149056459|gb|EDM07890.1| glia maturation factor ( 142) 342 87.8 4.1e-16 gi|46576645|sp|Q9ERL7|GMFG_MOUSE Glia maturation f ( 142) 341 87.5 4.9e-16 gi|159163308|pdb|1WFS|A Chain A, Solution Structur ( 151) 341 87.6 5.1e-16 gi|52696123|pdb|1VKK|A Chain A, Crystal Structure ( 154) 341 87.6 5.2e-16 gi|34783447|gb|AAH32819.2| GMFG protein [Homo sapi ( 141) 339 87.1 6.7e-16 gi|75052095|sp|Q56JZ9|GMFG_BOVIN Glia maturation f ( 142) 339 87.1 6.7e-16 gi|148682030|gb|EDL13977.1| mCG128295 [Mus musculu ( 154) 334 85.9 1.6e-15 gi|149254837|ref|XP_001474001.1| PREDICTED: simila ( 165) 334 85.9 1.7e-15 gi|149254926|ref|XP_001474874.1| PREDICTED: simila ( 209) 334 86.0 2e-15 gi|126329205|ref|XP_001368575.1| PREDICTED: simila ( 164) 331 85.2 2.8e-15 gi|7768638|dbj|BAA95482.1| glia maturation factor ( 142) 313 81.0 4.6e-14 gi|90112039|gb|AAI14333.1| Zgc:136987 [Danio rerio ( 142) 310 80.3 7.4e-14 gi|51593527|gb|AAH78467.1| MGC85221 protein [Xenop ( 126) 285 74.4 3.9e-12 gi|190580149|gb|EDV20234.1| hypothetical protein T ( 208) 268 70.6 9.2e-11 gi|109124672|ref|XP_001085983.1| PREDICTED: simila ( 168) 258 68.2 3.9e-10 gi|193904925|gb|EDW03792.1| GH11432 [Drosophila gr ( 138) 252 66.7 8.9e-10 gi|22946611|gb|AAF53517.2| CG5869-PA [Drosophila m ( 138) 251 66.4 1.1e-09 gi|194176062|gb|EDW89673.1| GE19369 [Drosophila ya ( 138) 248 65.7 1.7e-09 >>gi|62088060|dbj|BAD92477.1| glia maturation factor, be (112 aa) initn: 729 init1: 729 opt: 729 Z-score: 935.7 bits: 178.3 E(): 1.8e-43 Smith-Waterman score: 729; 100.000% identity (100.000% similar) in 112 aa overlap (1-112:1-112) 10 20 30 40 50 60 fj1590 GDRPLTAGRKMSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GDRPLTAGRKMSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELE 10 20 30 40 50 60 70 80 90 100 110 fj1590 GISPDELKDELPERQPRPSLCIVININMMMEEFHILCALFSPVLLDVSLNNR :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GISPDELKDELPERQPRPSLCIVININMMMEEFHILCALFSPVLLDVSLNNR 70 80 90 100 110 >>gi|73963887|ref|XP_853603.1| PREDICTED: similar to Gli (101 aa) initn: 441 init1: 441 opt: 593 Z-score: 764.2 bits: 146.4 E(): 6.4e-34 Smith-Waterman score: 593; 92.157% identity (95.098% similar) in 102 aa overlap (11-112:1-101) 10 20 30 40 50 60 fj1590 GDRPLTAGRKMSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELE :::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 MSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELE 10 20 30 40 50 70 80 90 100 110 fj1590 GISPDELKDELPERQPRPSLCIVININMMMEEFHILCALFSPVLLDVSLNNR ::::::::::::::::: . ..:: ::::::::::::::::::: :::::: gi|739 GISPDELKDELPERQPRYPF-LIINTNMMMEEFHILCALFSPVLLGVSLNNR 60 70 80 90 100 >>gi|148688775|gb|EDL20722.1| glia maturation factor, be (179 aa) initn: 451 init1: 451 opt: 461 Z-score: 593.6 bits: 115.7 E(): 2e-24 Smith-Waterman score: 461; 72.897% identity (85.981% similar) in 107 aa overlap (1-103:28-131) 10 20 30 fj1590 GDRPLTAGRKMSESLVVCDVAEDLVEKLRKFRF :. :::.:::::::::::::::::::::::::: gi|148 GRLSGAPAETGRELAAEPFLKGPKRSHGNGPLTTGRKMSESLVVCDVAEDLVEKLRKFRF 10 20 30 40 50 60 40 50 60 70 80 90 fj1590 RKETNNAAIIMKIDKDKRLVVLDEELEGISPDELKDELPERQPRPSLCIVININMMMEEF ::::.:::::::::::::::::::::::.::::::::::::: . :: . ... .. gi|148 RKETHNAAIIMKIDKDKRLVVLDEELEGVSPDELKDELPERQ---KTFIVYSYKYQHDDG 70 80 90 100 110 100 110 fj1590 HI---LCALFS-PVLLDVSLNNR .. :: .:: :: gi|148 RVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAELTKVFEIRNTEDLTEEWLREKLGF 120 130 140 150 160 170 >>gi|109083702|ref|XP_001085066.1| PREDICTED: glia matur (142 aa) initn: 427 init1: 427 opt: 438 Z-score: 565.9 bits: 110.3 E(): 7e-23 Smith-Waterman score: 438; 77.320% identity (86.598% similar) in 97 aa overlap (11-103:1-94) 10 20 30 40 50 60 fj1590 GDRPLTAGRKMSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELE :::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 MSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELE 10 20 30 40 50 70 80 90 100 110 fj1590 GISPDELKDELPERQPRPSLCIVININMMMEEFHI---LCALFS-PVLLDVSLNNR ::::::::::::::::: :: . ... .. .. :: .:: :: gi|109 GISPDELKDELPERQPR---FIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGS 60 70 80 90 100 gi|109 KNKLVQTAELTKVVFIFDLLRQYFPLDYKAIAKIV 110 120 130 140 >>gi|75054815|sp|Q5R6P6.3|GMFB_PONAB Glia maturation fac (142 aa) initn: 427 init1: 427 opt: 438 Z-score: 565.9 bits: 110.3 E(): 7e-23 Smith-Waterman score: 438; 77.320% identity (86.598% similar) in 97 aa overlap (11-103:1-94) 10 20 30 40 50 60 fj1590 GDRPLTAGRKMSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELE :::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 MSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELE 10 20 30 40 50 70 80 90 100 110 fj1590 GISPDELKDELPERQPRPSLCIVININMMMEEFHI---LCALFS-PVLLDVSLNNR ::::::::::::::::: :: . ... .. .. :: .:: :: gi|750 GISPDELKDELPERQPR---FIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGS 60 70 80 90 100 gi|750 KNKLVQTAELTKVFEIRNTEDLTEEWLREKLGFFH 110 120 130 140 >>gi|60831667|gb|AAX36979.1| glia maturation factor beta (143 aa) initn: 427 init1: 427 opt: 438 Z-score: 565.9 bits: 110.3 E(): 7.1e-23 Smith-Waterman score: 438; 77.320% identity (86.598% similar) in 97 aa overlap (11-103:1-94) 10 20 30 40 50 60 fj1590 GDRPLTAGRKMSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELE :::::::::::::::::::::::::::::::::::::::::::::::::: gi|608 MSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELE 10 20 30 40 50 70 80 90 100 110 fj1590 GISPDELKDELPERQPRPSLCIVININMMMEEFHI---LCALFS-PVLLDVSLNNR ::::::::::::::::: :: . ... .. .. :: .:: :: gi|608 GISPDELKDELPERQPR---FIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGS 60 70 80 90 100 gi|608 KNKLVQTAELTKVFEIRNTEDLTEEWLREKLGFFHD 110 120 130 140 >>gi|114653099|ref|XP_001160598.1| PREDICTED: glia matur (154 aa) initn: 427 init1: 427 opt: 438 Z-score: 565.4 bits: 110.3 E(): 7.5e-23 Smith-Waterman score: 438; 77.320% identity (86.598% similar) in 97 aa overlap (11-103:1-94) 10 20 30 40 50 60 fj1590 GDRPLTAGRKMSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELE :::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 MSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELE 10 20 30 40 50 70 80 90 100 110 fj1590 GISPDELKDELPERQPRPSLCIVININMMMEEFHI---LCALFS-PVLLDVSLNNR ::::::::::::::::: :: . ... .. .. :: .:: :: gi|114 GISPDELKDELPERQPR---FIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGS 60 70 80 90 100 gi|114 KNKLVQTAELTKVFEIRNTEDLTEEWLREKLGFFPYVNFCVSKVFMY 110 120 130 140 150 >>gi|13529185|gb|AAH05359.1| GMFB protein [Homo sapiens] (154 aa) initn: 427 init1: 427 opt: 438 Z-score: 565.4 bits: 110.3 E(): 7.5e-23 Smith-Waterman score: 438; 77.320% identity (86.598% similar) in 97 aa overlap (11-103:1-94) 10 20 30 40 50 60 fj1590 GDRPLTAGRKMSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELE :::::::::::::::::::::::::::::::::::::::::::::::::: gi|135 MSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELE 10 20 30 40 50 70 80 90 100 110 fj1590 GISPDELKDELPERQPRPSLCIVININMMMEEFHI---LCALFS-PVLLDVSLNNR ::::::::::::::::: :: . ... .. .. :: .:: :: gi|135 GISPDELKDELPERQPR---FIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGS 60 70 80 90 100 gi|135 KNKLVQTAELTKVFEIRNTEDLTEEWLREKLGFFTNVNFCVSKVFMY 110 120 130 140 150 >>gi|30583795|gb|AAP36146.1| Homo sapiens glia maturatio (155 aa) initn: 427 init1: 427 opt: 438 Z-score: 565.4 bits: 110.3 E(): 7.5e-23 Smith-Waterman score: 438; 77.320% identity (86.598% similar) in 97 aa overlap (11-103:1-94) 10 20 30 40 50 60 fj1590 GDRPLTAGRKMSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELE :::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 MSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELE 10 20 30 40 50 70 80 90 100 110 fj1590 GISPDELKDELPERQPRPSLCIVININMMMEEFHI---LCALFS-PVLLDVSLNNR ::::::::::::::::: :: . ... .. .. :: .:: :: gi|305 GISPDELKDELPERQPR---FIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGS 60 70 80 90 100 gi|305 KNKLVQTAELTKVFEIRNTEDLTEEWLREKLGFFTNVNFCVSKVFMYL 110 120 130 140 150 >>gi|10764635|gb|AAG22803.1|AF297220_1 glia maturation f (142 aa) initn: 420 init1: 420 opt: 431 Z-score: 557.1 bits: 108.6 E(): 2.2e-22 Smith-Waterman score: 431; 75.258% identity (86.598% similar) in 97 aa overlap (11-103:1-94) 10 20 30 40 50 60 fj1590 GDRPLTAGRKMSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELE :::::::::::::::::::::::::::.:::::::::::::::::::::: gi|107 MSESLVVCDVAEDLVEKLRKFRFRKETHNAAIIMKIDKDKRLVVLDEELE 10 20 30 40 50 70 80 90 100 110 fj1590 GISPDELKDELPERQPRPSLCIVININMMMEEFHI---LCALFS-PVLLDVSLNNR :.::::::::::::::: :: . ... .. .. :: .:: :: gi|107 GVSPDELKDELPERQPR---FIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGS 60 70 80 90 100 gi|107 KNKLVQTAELTKVFEIRNTEDLTEEWLREKLGFFH 110 120 130 140 112 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Sun Aug 10 17:22:50 2008 done: Sun Aug 10 17:25:57 2008 Total Scan time: 508.320 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]