hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-10170184/chunk_1/iprscan-20090618-10170184.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj15914 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00028.8.ls Cadherin domain 301.7 1.3e-87 5 PF00028.8.fs Cadherin domain 298.4 1.3e-86 6 PF08266.2.fs Cadherin-like 148.2 6.2e-43 1 PF08266.2.ls Cadherin-like 150.2 5.2e-42 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08266.2.ls 1/1 36 119 .. 1 84 [] 150.2 5.2e-42 PF08266.2.fs 1/1 36 119 .. 1 84 [] 148.2 6.2e-43 PF00028.8.ls 1/5 145 240 .. 1 107 [] 35.7 1.5e-07 PF00028.8.fs 2/6 145 240 .. 1 107 [] 33.8 4.4e-09 PF00028.8.ls 2/5 254 348 .. 1 107 [] 94.2 3.6e-25 PF00028.8.fs 3/6 254 348 .. 1 107 [] 92.4 7e-26 PF00028.8.ls 3/5 362 453 .. 1 107 [] 54.3 3.6e-13 PF00028.8.fs 4/6 362 453 .. 1 107 [] 52.5 1.9e-14 PF00028.8.fs 5/6 467 563 .. 1 107 [] 61.9 3.9e-17 PF00028.8.ls 4/5 467 563 .. 1 107 [] 63.8 5.3e-16 PF00028.8.fs 6/6 580 677 .. 1 107 [] 51.8 3.1e-14 PF00028.8.ls 5/5 580 677 .. 1 107 [] 53.6 5.9e-13 Alignments of top-scoring domains: PF08266.2.ls: domain 1 of 1, from 36 to 119: score 150.2, E = 5.2e-42 *->gqirYSVpEEterGsfVGNlAKDLGLdvqeLaaRgaRivSggnkqyF gq++YS+pEE+++G+fVG +A+DLGL+++eL R +R++S+ + ++ fj15914 36 GQLHYSIPEEAKHGTFVGRVAQDLGLELAELVPRLFRVASKTHRDLL 82 qlnletGdLlvnERiDREeLCgqsepCvLhlevllEn<-* ++nl++G L+vn RiDREeLC s+ C++hle++ + fj15914 83 EVNLQNGILFVNSRIDREELCQWSAECSIHLELIADR 119 PF08266.2.fs: domain 1 of 1, from 36 to 119: score 148.2, E = 6.2e-43 *->gqirYSVpEEterGsfVGNlAKDLGLdvqeLaaRgaRivSggnkqyF gq++YS+pEE+++G+fVG +A+DLGL+++eL R +R++S+ + ++ fj15914 36 GQLHYSIPEEAKHGTFVGRVAQDLGLELAELVPRLFRVASKTHRDLL 82 qlnletGdLlvnERiDREeLCgqsepCvLhlevllEn<-* ++nl++G L+vn RiDREeLC s+ C++hle++ + fj15914 83 EVNLQNGILFVNSRIDREELCQWSAECSIHLELIADR 119 PF00028.8.ls: domain 1 of 5, from 145 to 240: score 35.7, E = 1.5e-07 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr + + +pE +++ +A DaD g+N+ ++Y +++ + F+ fj15914 145 QIIFIPESRLLNSRFPIEGAADAD--IGANALLTYTLSPSD---YFS 186 IdpdtGdnegi...isttkpLDREeifngeYeLtveAtDadpllasgggp +d + d+ + + + ++k LDREe+ +e +L + AtD+ g p fj15914 187 LDVEASDELSKslwLELRKYLDREET--PELHLLLTATDG-------GKP 227 plsstatvtitVl<-* l +t+++ itVl fj15914 228 ELQGTVELLITVL 240 PF00028.8.fs: domain 2 of 6, from 145 to 240: score 33.8, E = 4.4e-09 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr + + +pE +++ +A DaD g+N+ ++Y +++ + F+ fj15914 145 QIIFIPESRLLNSRFPIEGAADAD--IGANALLTYTLSPSD---YFS 186 IdpdtGdnegi...isttkpLDREeifngeYeLtveAtDadpllasgggp +d + d+ + + + ++k LDREe+ +e +L + AtD+ g p fj15914 187 LDVEASDELSKslwLELRKYLDREET--PELHLLLTATDG-------GKP 227 plsstatvtitVl<-* l +t+++ itVl fj15914 228 ELQGTVELLITVL 240 PF00028.8.ls: domain 2 of 5, from 254 to 348: score 94.2, E = 3.6e-25 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp...gg y +++ E++++Gt v+t++A+DaD +g Ng +++s+ +g +++ fj15914 254 YRVHLLETTANGTLVTTLNASDAD--EGVNGEVVFSFDSGISrdiQE 298 wFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggp +F++d+ +G+ i++ LD+Ee+ Ye+ v+A+D g+p fj15914 299 KFKVDSSSGE----IRLIDKLDYEET--KSYEIQVKAVDK-------GSP 335 plsstatvtitVl<-* p+s+ + v ++Vl fj15914 336 PMSNHCKVLVKVL 348 PF00028.8.fs: domain 3 of 6, from 254 to 348: score 92.4, E = 7e-26 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp...gg y +++ E++++Gt v+t++A+DaD +g Ng +++s+ +g +++ fj15914 254 YRVHLLETTANGTLVTTLNASDAD--EGVNGEVVFSFDSGISrdiQE 298 wFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggp +F++d+ +G+ i++ LD+Ee+ Ye+ v+A+D g+p fj15914 299 KFKVDSSSGE----IRLIDKLDYEET--KSYEIQVKAVDK-------GSP 335 plsstatvtitVl<-* p+s+ + v ++Vl fj15914 336 PMSNHCKVLVKVL 348 PF00028.8.ls: domain 3 of 5, from 362 to 453: score 54.3, E = 3.6e-13 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr ++E+ap t ++ +t++D+D +g+Ng+++ s+ ++ p + + fj15914 362 LYLPIREDAPLSTVIALITVSDRD--SGANGQVTCSLMPHVPFKLVS 406 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls ++ + + + LDRE+ + YeL+v A+D+ g+p+l fj15914 407 TFKNYYS----LVLDSALDRESL--SVYELVVTARDG-------GSPSLW 443 statvtitVl<-* +ta+v ++V fj15914 444 ATARVSVEVA 453 PF00028.8.fs: domain 4 of 6, from 362 to 453: score 52.5, E = 1.9e-14 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr ++E+ap t ++ +t++D+D +g+Ng+++ s+ ++ p + + fj15914 362 LYLPIREDAPLSTVIALITVSDRD--SGANGQVTCSLMPHVPFKLVS 406 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls ++ + + + LDRE+ + YeL+v A+D+ g+p+l fj15914 407 TFKNYYS----LVLDSALDRESL--SVYELVVTARDG-------GSPSLW 443 statvtitVl<-* +ta+v ++V fj15914 444 ATARVSVEVA 453 PF00028.8.fs: domain 5 of 6, from 467 to 563: score 61.9, E = 3.9e-17 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..... y++ v+En p+G ++ tv A+DaD N+ ++Ys+++ ++++ fj15914 467 YTVFVKENNPPGCHIFTVSARDAD--AQENALVSYSLVERRVgeral 511 ggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgg ++ +++ ++G ++ +pLD Ee + + v+A+Da g fj15914 512 SNYVSVHAESGK----VYALQPLDHEEL--ELLQFQVSARDA-------G 548 gpplsstatvtitVl<-* ppl s +t+ + Vl fj15914 549 VPPLGSNVTLQVFVL 563 PF00028.8.ls: domain 4 of 5, from 467 to 563: score 63.8, E = 5.3e-16 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..... y++ v+En p+G ++ tv A+DaD N+ ++Ys+++ ++++ fj15914 467 YTVFVKENNPPGCHIFTVSARDAD--AQENALVSYSLVERRVgeral 511 ggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgg ++ +++ ++G ++ +pLD Ee + + v+A+Da g fj15914 512 SNYVSVHAESGK----VYALQPLDHEEL--ELLQFQVSARDA-------G 548 gpplsstatvtitVl<-* ppl s +t+ + Vl fj15914 549 VPPLGSNVTLQVFVL 563 PF00028.8.fs: domain 6 of 6, from 580 to 677: score 51.8, E = 3.1e-14 *->ysasvpEnap....vGtevltvtAtDaDdPlgpNgrirYsi..lggn + v+E +p+ + G v+ v+A+DaD +g N+ ++Y +++ g+ fj15914 580 TIGAVSELVPrlvgAGHVVAKVRAVDAD--SGYNAWLSYELqpAAGG 624 pggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasg + Fr+ +tG+ istt+ LD ++Y+L v+++D+ fj15914 625 ARIPFRVGLYTGE----ISTTRVLDEADL--SRYRLLVLVKDH------- 661 ggpplsstatvtitVl<-* g+p+l++tatv +++ fj15914 662 GEPALTATATVLVSLV 677 PF00028.8.ls: domain 5 of 5, from 580 to 677: score 53.6, E = 5.9e-13 *->ysasvpEnap....vGtevltvtAtDaDdPlgpNgrirYsi..lggn + v+E +p+ + G v+ v+A+DaD +g N+ ++Y +++ g+ fj15914 580 TIGAVSELVPrlvgAGHVVAKVRAVDAD--SGYNAWLSYELqpAAGG 624 pggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasg + Fr+ +tG+ istt+ LD ++Y+L v+++D+ fj15914 625 ARIPFRVGLYTGE----ISTTRVLDEADL--SRYRLLVLVKDH------- 661 ggpplsstatvtitVl<-* g+p+l++tatv +++ fj15914 662 GEPALTATATVLVSLV 677 //