hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-10170184/chunk_1/iprscan-20090618-10170184.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj15914 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00112 473.0 1.4e-137 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00112 1/6 54 138 .. 1 121 [] 10.0 0.24 SM00112 2/6 162 247 .. 1 121 [] 81.4 1.1e-19 SM00112 3/6 271 355 .. 1 121 [] 113.0 3.3e-29 SM00112 4/6 379 460 .. 1 121 [] 100.2 2.4e-25 SM00112 5/6 484 570 .. 1 121 [] 101.1 1.3e-25 SM00112 6/6 601 683 .. 1 121 [] 67.3 2e-15 Alignments of top-scoring domains: SM00112: domain 1 of 6, from 54 to 138: score 10.0, E = 0.24 *->vsAtDaDsgsngeNgkpgdaevvtYsils........lFsIdpetGt +A D+ e ++ ++ ++ + ++++++l +++ ++G fj15914 54 RVAQDLGL----ELAE------LVPRLFRvaskthrdLLEVNLQNG- 89 ngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppg i++++ ++DREe ++ + + + + p fj15914 90 ----------ILFVNSRIDREELCQ-------WSAECSIHLELIADRP-- 120 dssptrksqqtpplsstatvtvtVlDvNDNaP<-* l+ v v+V+D+NDN+P fj15914 121 -------------LQ-VFHVEVKVKDINDNPP 138 SM00112: domain 2 of 6, from 162 to 247: score 81.4, E = 1.1e-19 *->vsAtDaDsgsngeNgkpgdaevvtYsils..lFsIdpetGtngpsLv A DaD g N+ +tY+++++++Fs+d e fj15914 162 EGAADADIG---ANAL------LTYTLSPsdYFSLDVEASD----EL 195 kleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssptr + +++ ++k LDREe+ +e +L +AtDgG p fj15914 196 SKSLWLELRKYLDREET---------PELHLLLTATDGGKPE-------- 228 ksqqtpplsstatvtvtVlDvNDNaP<-* l++t+++ +tVlDvNDNaP fj15914 229 -------LQGTVELLITVLDVNDNAP 247 SM00112: domain 3 of 6, from 271 to 355: score 113.0, E = 3.3e-29 *->vsAtDaDsgsngeNgkpgdaevvtYsils........lFsIdpetGt ++A+DaD+g Ng+ v++s+ s+ +++ +++F++d+++G fj15914 271 LNASDADEG---VNGE------VVFSFDSgisrdiqeKFKVDSSSG- 307 ngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppg +i++ LD+Ee+ ++Y+++v+A+D+G+pp fj15914 308 ----------EIRLIDKLDYEET---------KSYEIQVKAVDKGSPP-- 336 dssptrksqqtpplsstatvtvtVlDvNDNaP<-* +s ++ v v+VlDvNDNaP fj15914 337 -------------MSNHCKVLVKVLDVNDNAP 355 SM00112: domain 4 of 6, from 379 to 460: score 100.2, E = 2.4e-25 *->vsAtDaDsgsngeNgkpgdaevvtYsils..lFsIdpetGtngpsLv ++++D+Dsg Ng+ vt+s+ ++ +F++ ++ + fj15914 379 ITVSDRDSG---ANGQ------VTCSLMPhvPFKLVSTFKN------ 410 kleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssptr ++ +++ +LDRE+ s+Y+L+v+A+DgG+p+ fj15914 411 --YYSLVLDSALDRESL---------SVYELVVTARDGGSPS-------- 441 ksqqtpplsstatvtvtVlDvNDNaP<-* l +ta v v+V DvNDNaP fj15914 442 -------LWATARVSVEVADVNDNAP 460 SM00112: domain 5 of 6, from 484 to 570: score 101.1, E = 1.3e-25 *->vsAtDaDsgsngeNgkpgdaevvtYsils..........lFsIdpet vsA+DaD+ eN+ v+Ys+++++ +++ +++ s+++e+ fj15914 484 VSARDADAQ---ENAL------VSYSLVErrvgeralsnYVSVHAES 521 GtngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpp G +++++pLD+Ee + +++v A+D+G pp fj15914 522 G-----------KVYALQPLDHEEL---------ELLQFQVSARDAGVPP 551 pgdssptrksqqtpplsstatvtvtVlDvNDNaP<-* l s++t++v+VlD+NDNaP fj15914 552 ---------------LGSNVTLQVFVLDENDNAP 570 SM00112: domain 6 of 6, from 601 to 683: score 67.3, E = 2e-15 *->vsAtDaDsgsngeNgkpgdaevvtYsils.......lFsIdpetGtn v+A+DaDsg N++ ++Y++ + ++ + +F++ tG fj15914 601 VRAVDADSG---YNAW------LSYELQPaaggariPFRVGLYTG-- 636 gpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgd +i+tt+ LD + s+Y+L v ++D+G+p fj15914 637 ---------EISTTRVLDEADL---------SRYRLLVLVKDHGEPA--- 665 ssptrksqqtpplsstatvtvtVlDvNDNaP<-* l++tatv v ++ aP fj15914 666 ------------LTATATVLVSLVE-SGQAP 683 //