hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-17384567/chunk_1/iprscan-20080810-17384567.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj16004 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07714.7.ls Protein tyrosine kinase 508.3 8e-150 1 PF07714.7.fs Protein tyrosine kinase 506.4 2.9e-149 1 PF01404.9.ls Ephrin receptor ligand binding domain 482.9 3.5e-142 1 PF01404.9.fs Ephrin receptor ligand binding domain 480.9 1.4e-141 1 PF00069.15.ls Protein kinase domain 170.5 3.8e-48 1 PF00069.15.fs Protein kinase domain 168.7 8.3e-48 1 PF00041.11.ls Fibronectin type III domain 149.9 6.1e-42 2 PF00041.11.fs Fibronectin type III domain 145.9 3e-41 2 PF00536.20.fs SAM domain (Sterile alpha motif) 109.7 1.1e-31 1 PF00536.20.ls SAM domain (Sterile alpha motif) 111.7 2e-30 1 PF07647.7.fs SAM domain (Sterile alpha motif) 89.6 1.2e-25 1 PF07647.7.ls SAM domain (Sterile alpha motif) 91.6 2.2e-24 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01404.9.fs 1/1 38 215 .. 1 177 [] 480.9 1.4e-141 PF01404.9.ls 1/1 38 215 .. 1 177 [] 482.9 3.5e-142 PF00041.11.ls 1/2 343 439 .. 1 84 [] 65.1 2e-16 PF00041.11.fs 1/2 343 439 .. 1 84 [] 63.1 1.7e-17 PF00041.11.ls 2/2 454 538 .. 1 84 [] 84.8 2.5e-22 PF00041.11.fs 2/2 454 538 .. 1 84 [] 82.8 4e-23 PF00069.15.ls 1/1 639 898 .. 1 287 [] 170.5 3.8e-48 PF00069.15.fs 1/1 639 898 .. 1 287 [] 168.7 8.3e-48 PF07714.7.fs 1/1 639 898 .. 1 272 [] 506.4 2.9e-149 PF07714.7.ls 1/1 639 898 .. 1 272 [] 508.3 8e-150 PF07647.7.fs 1/1 928 995 .. 1 72 [] 89.6 1.2e-25 PF07647.7.ls 1/1 928 995 .. 1 72 [] 91.6 2.2e-24 PF00536.20.fs 1/1 929 993 .. 1 65 [] 109.7 1.1e-31 PF00536.20.ls 1/1 929 993 .. 1 65 [] 111.7 2e-30 Alignments of top-scoring domains: PF01404.9.fs: domain 1 of 1, from 38 to 215: score 480.9, E = 1.4e-141 *->EvtLLDtktatgELGWltyPpdGWeEvsglDEnnrpIrTYQVCnVme E+tL+D++tat+ELGW+++Pp+GWeEvsg+DEn+++IrTYQVCnV+e fj16004 38 EETLMDSTTATAELGWMVHPPSGWEEVSGYDENMNTIRTYQVCNVFE 84 pnQnNWLRTnwIeRrgAqRvyveLkFTvRDCnSlPgvlGtCKETFNLYYy ++QnNWLRT++I+RrgA+R++ve+kF+vRDC+S+P v+G+CKETFNLYYy fj16004 85 SSQNNWLRTKFIRRRGAHRIHVEMKFSVRDCSSIPSVPGSCKETFNLYYY 134 ESDedvgta.lpawrenqyiKvDTIAADESFtqvDlgdrvlKLNtEvRsv E+D d +t+++p+w+en+++KvDTIAADESF+qvDlg+rv+K+NtEvRs+ fj16004 135 EADFDSATKtFPNWMENPWVKVDTIAADESFSQVDLGGRVMKINTEVRSF 184 GPLsKkGFYLAFQDvGACiALvSVRVFYKKC<-* GP+s+ GFYLAFQD+G C++L++VRVFY+KC fj16004 185 GPVSRSGFYLAFQDYGGCMSLIAVRVFYRKC 215 PF01404.9.ls: domain 1 of 1, from 38 to 215: score 482.9, E = 3.5e-142 *->EvtLLDtktatgELGWltyPpdGWeEvsglDEnnrpIrTYQVCnVme E+tL+D++tat+ELGW+++Pp+GWeEvsg+DEn+++IrTYQVCnV+e fj16004 38 EETLMDSTTATAELGWMVHPPSGWEEVSGYDENMNTIRTYQVCNVFE 84 pnQnNWLRTnwIeRrgAqRvyveLkFTvRDCnSlPgvlGtCKETFNLYYy ++QnNWLRT++I+RrgA+R++ve+kF+vRDC+S+P v+G+CKETFNLYYy fj16004 85 SSQNNWLRTKFIRRRGAHRIHVEMKFSVRDCSSIPSVPGSCKETFNLYYY 134 ESDedvgta.lpawrenqyiKvDTIAADESFtqvDlgdrvlKLNtEvRsv E+D d +t+++p+w+en+++KvDTIAADESF+qvDlg+rv+K+NtEvRs+ fj16004 135 EADFDSATKtFPNWMENPWVKVDTIAADESFSQVDLGGRVMKINTEVRSF 184 GPLsKkGFYLAFQDvGACiALvSVRVFYKKC<-* GP+s+ GFYLAFQD+G C++L++VRVFY+KC fj16004 185 GPVSRSGFYLAFQDYGGCMSLIAVRVFYRKC 215 PF00041.11.ls: domain 1 of 2, from 343 to 439: score 65.1, E = 2e-16 *->PsaPtnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngge PsaP+ + +++v++tsl l+W+pP+++g+++ Y++ + +++++g fj16004 343 PSAPQAV-ISSVNETSLMLEWTPPRdsGGREDLVYNIIC-KSCGSGR 387 ...........wkeltvpgtttsytltgLkPgteYtvrVqAvnggG..Gp + ++ +++ + +++ t+ + +++L ++t+Yt+ +qAvng+++++p fj16004 388 gactrcgdnvqYAPRQLGLTEPRIYISDLLAHTQYTFEIQAVNGVTdqSP 437 eS<-* +S fj16004 438 FS 439 PF00041.11.fs: domain 1 of 2, from 343 to 439: score 63.1, E = 1.7e-17 *->PsaPtnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngge PsaP+ + +++v++tsl l+W+pP+++g+++ Y++ + +++++g fj16004 343 PSAPQAV-ISSVNETSLMLEWTPPRdsGGREDLVYNIIC-KSCGSGR 387 ...........wkeltvpgtttsytltgLkPgteYtvrVqAvnggG..Gp + ++ +++ + +++ t+ + +++L ++t+Yt+ +qAvng+++++p fj16004 388 gactrcgdnvqYAPRQLGLTEPRIYISDLLAHTQYTFEIQAVNGVTdqSP 437 eS<-* +S fj16004 438 FS 439 PF00041.11.ls: domain 2 of 2, from 454 to 538: score 84.8, E = 2.5e-22 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpknggew Psa++ ++ ++t +s+tlsWs P+++ng+i Ye++y ++k +e fj16004 454 PSAVSIMHQVSRTVDSITLSWSQPDqPNGVILDYELQY-YEKELSEY 499 keltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* + ++++t+++t++gLk+g Y+++V+A++ +G G++S fj16004 500 NATAIKSPTNTVTVQGLKAGAIYVFQVRARTVAGyGRYS 538 PF00041.11.fs: domain 2 of 2, from 454 to 538: score 82.8, E = 4e-23 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpknggew Psa++ ++ ++t +s+tlsWs P+++ng+i Ye++y ++k +e fj16004 454 PSAVSIMHQVSRTVDSITLSWSQPDqPNGVILDYELQY-YEKELSEY 499 keltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* + ++++t+++t++gLk+g Y+++V+A++ +G G++S fj16004 500 NATAIKSPTNTVTVQGLKAGAIYVFQVRARTVAGyGRYS 538 PF00069.15.ls: domain 1 of 1, from 639 to 898: score 170.5, E = 3.8e-48 *->yelleklGsGsfGtVykakhkgtgk...iVAvKiikkrkekskkdkt ++++++G+G fG+V+ ++ k gk++ VA+K++k +++ +++ fj16004 639 VKIEQVIGAGEFGEVCSGHLKLPGKreiFVAIKTLKSGYTEK--QRR 683 arrlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdy ++++ E++i+ ++HpN++ l +v++ ++ + +++E++e+G +L ++ fj16004 684 DFLS-EASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENG----SLDSF 728 lsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldn l+ +++g + + ++ +++ i+ g++YL +++ +HRDL NIL+++ fj16004 729 LR--QNDGQF--TVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNS 774 ngvvdaflKiaDFGlAkkls....t.sss.lttfvGTpwYmAPEvllggn n v+ K++DFGl+++l+++++ + ++++ + +++ APE ++ ++ fj16004 775 NLVC----KVSDFGLSRFLEddtsDpTYTsALGGKIPIRWTAPEAIQ-YR 819 gygtkvDvWSlGvilyellt.GkpPFsgevqds.ldqlqlirkilgpple + ++++DvWS+G++++e+++ G+ P+++ ++ d + i+++ + p++ fj16004 820 KFTSASDVWSYGIVMWEVMSyGERPYWDM---TnQDVINAIEQDYRLPPP 866 fdspewdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPw d+p +++ +L+ +c++kD + R+ + +i++ fj16004 867 MDCP-----------------SALHQLMLDCWQKDRNHRPKFGQIVNT-- 897 f<-* + fj16004 898 L 898 PF00069.15.fs: domain 1 of 1, from 639 to 898: score 168.7, E = 8.3e-48 *->yelleklGsGsfGtVykakhkgtgk...iVAvKiikkrkekskkdkt ++++++G+G fG+V+ ++ k gk++ VA+K++k +++ +++ fj16004 639 VKIEQVIGAGEFGEVCSGHLKLPGKreiFVAIKTLKSGYTEK--QRR 683 arrlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdy ++++ E++i+ ++HpN++ l +v++ ++ + +++E++e+G +L ++ fj16004 684 DFLS-EASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENG----SLDSF 728 lsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldn l+ +++g + + ++ +++ i+ g++YL +++ +HRDL NIL+++ fj16004 729 LR--QNDGQF--TVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNS 774 ngvvdaflKiaDFGlAkkls....t.sss.lttfvGTpwYmAPEvllggn n v+ K++DFGl+++l+++++ + ++++ + +++ APE ++ ++ fj16004 775 NLVC----KVSDFGLSRFLEddtsDpTYTsALGGKIPIRWTAPEAIQ-YR 819 gygtkvDvWSlGvilyellt.GkpPFsgevqds.ldqlqlirkilgpple + ++++DvWS+G++++e+++ G+ P+++ ++ d + i+++ + p++ fj16004 820 KFTSASDVWSYGIVMWEVMSyGERPYWDM---TnQDVINAIEQDYRLPPP 866 fdspewdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPw d+p +++ +L+ +c++kD + R+ + +i++ fj16004 867 MDCP-----------------SALHQLMLDCWQKDRNHRPKFGQIVNT-- 897 f<-* + fj16004 898 L 898 PF07714.7.fs: domain 1 of 1, from 639 to 898: score 506.4, E = 2.9e-149 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeeie +k+ +++G+G+FGeV+ G+lk ++++ ei VA+KtLk g++e++ fj16004 639 VKIEQVIGAGEFGEVCSGHLK-LPGKREIFVAIKTLKS-GYTEKQ-- 681 redFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGdL r+dFl+EAsiM ++ dHpN++ L Gv+tk + P ++i+tE+me+G+L fj16004 682 RRDFLSEASIMGQF-DHPNVIHLEGVVTK-STP----VMIITEFMENGSL 725 ldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLVs ++fLr++ ++++t+ +L+++ + iA+GM YL+++n+vHRDLAARN+LV+ fj16004 726 DSFLRQN--DGQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVN 773 enlvVKIsDFGLaRdi...ynddyYvrkkgggklPvkWmAPEslkygkFt +nlv+K+sDFGL+R ++++++d +Y ++ ggk+P++W+APE+++y+kFt fj16004 774 SNLVCKVSDFGLSRFLeddTSDPTY-TSALGGKIPIRWTAPEAIQYRKFT 822 skSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLprPenCP s+SDVWS+G+++WE++++Ge P Y++m+n++v++ + e++yRLp+P++CP fj16004 823 SASDVWSYGIVMWEVMSYGERP-YWDMTNQDVINAI-EQDYRLPPPMDCP 870 delYdlMlqCWaedPedRPtFselveeL<-* l++lMl+CW++d ++RP F ++v+ L fj16004 871 SALHQLMLDCWQKDRNHRPKFGQIVNTL 898 PF07714.7.ls: domain 1 of 1, from 639 to 898: score 508.3, E = 8e-150 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeeie +k+ +++G+G+FGeV+ G+lk ++++ ei VA+KtLk g++e++ fj16004 639 VKIEQVIGAGEFGEVCSGHLK-LPGKREIFVAIKTLKS-GYTEKQ-- 681 redFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGdL r+dFl+EAsiM ++ dHpN++ L Gv+tk + P ++i+tE+me+G+L fj16004 682 RRDFLSEASIMGQF-DHPNVIHLEGVVTK-STP----VMIITEFMENGSL 725 ldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLVs ++fLr++ ++++t+ +L+++ + iA+GM YL+++n+vHRDLAARN+LV+ fj16004 726 DSFLRQN--DGQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVN 773 enlvVKIsDFGLaRdi...ynddyYvrkkgggklPvkWmAPEslkygkFt +nlv+K+sDFGL+R ++++++d +Y ++ ggk+P++W+APE+++y+kFt fj16004 774 SNLVCKVSDFGLSRFLeddTSDPTY-TSALGGKIPIRWTAPEAIQYRKFT 822 skSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLprPenCP s+SDVWS+G+++WE++++Ge P Y++m+n++v++ + e++yRLp+P++CP fj16004 823 SASDVWSYGIVMWEVMSYGERP-YWDMTNQDVINAI-EQDYRLPPPMDCP 870 delYdlMlqCWaedPedRPtFselveeL<-* l++lMl+CW++d ++RP F ++v+ L fj16004 871 SALHQLMLDCWQKDRNHRPKFGQIVNTL 898 PF07647.7.fs: domain 1 of 1, from 928 to 995: score 89.6, E = 1.2e-25 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa ++++s+++v eWLe+i++ gqYk++F +g+t+++++ ++ +ed fj16004 928 PDYTSFNTVDEWLEAIKM-GQYKESFANAGFTSFDVV-SQMMMEDI- 971 klalGitsvghRkkilkkiqelkqq<-* + + G+t++gh+kkil++iq ++ q fj16004 972 L-RVGVTLAGHQKKILNSIQVMRAQ 995 PF07647.7.ls: domain 1 of 1, from 928 to 995: score 91.6, E = 2.2e-24 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa ++++s+++v eWLe+i++ gqYk++F +g+t+++++ ++ +ed fj16004 928 PDYTSFNTVDEWLEAIKM-GQYKESFANAGFTSFDVV-SQMMMEDI- 971 klalGitsvghRkkilkkiqelkqq<-* + + G+t++gh+kkil++iq ++ q fj16004 972 L-RVGVTLAGHQKKILNSIQVMRAQ 995 PF00536.20.fs: domain 1 of 1, from 929 to 993: score 109.7, E = 1.1e-31 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG d++sf++V+eWLe+i++gqY+++F+ ag++++d ++q+ +eD++++G fj16004 929 DYTSFNTVDEWLEAIKMGQYKESFANAGFTSFDVVSQMMMEDILRVG 975 vtllGHrkKIlssIqgLk<-* vtl+GH+kKIl+sIq ++ fj16004 976 VTLAGHQKKILNSIQVMR 993 PF00536.20.ls: domain 1 of 1, from 929 to 993: score 111.7, E = 2e-30 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG d++sf++V+eWLe+i++gqY+++F+ ag++++d ++q+ +eD++++G fj16004 929 DYTSFNTVDEWLEAIKMGQYKESFANAGFTSFDVVSQMMMEDILRVG 975 vtllGHrkKIlssIqgLk<-* vtl+GH+kKIl+sIq ++ fj16004 976 VTLAGHQKKILNSIQVMR 993 //