hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-17384567/chunk_1/iprscan-20080810-17384567.nocrc
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Query sequence: fj16004
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00219                                                 476.0   1.8e-138   1
SM00615                                                 447.0   9.9e-130   1
SM00220                                                 178.7    5.7e-49   1
SM00454                                                  93.9    1.9e-23   1
SM00060                                                  87.9    1.3e-21   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00615    1/1      38   215 ..     1   184 []   447.0 9.9e-130
SM00060    1/2     343   435 ..     1    69 []    37.1  2.4e-06
SM00060    2/2     454   535 ..     1    69 []    50.7  1.9e-10
SM00220    1/1     639   902 ..     1   231 []   178.7  5.7e-49
SM00219    1/1     639   898 ..     1   280 []   476.0 1.8e-138
SM00454    1/1     928   995 ..     1    67 []    93.9  1.9e-23

Alignments of top-scoring domains:
SM00615: domain 1 of 1, from 38 to 215: score 447.0, E = 9.9e-130
                   *->EVvLLDtktetgeLgWttyPpsggtWeEvsglDeknnpiRtYqvCnV
                      E++L+D++t+t+eLgW+ +Ppsg  WeEvsg+De++n+iRtYqvCnV
     fj16004    38    EETLMDSTTATAELGWMVHPPSG--WEEVSGYDENMNTIRTYQVCNV 82   

                   meinesnQNNWLrTnfIeRrgAsRiYVELkFTvRDCnSlpgvaglsCKET
                   +e   s+QNNWLrT+fI+RrgA+Ri+VE+kF+vRDC+S+p v+g sCKET
     fj16004    83 FE---SSQNNWLRTKFIRRRGAHRIHVEMKFSVRDCSSIPSVPG-SCKET 128  

                   FNLYYyEsDsdtatastpfwmenpyiKvDTiAADesftqvdlGdrvvklN
                   FNLYYyE+D d at+++p wmenp++KvDTiAADesf+qvdlG+rv+k+N
     fj16004   129 FNLYYYEADFDSATKTFPNWMENPWVKVDTIAADESFSQVDLGGRVMKIN 178  

                   tevrsvGplskkGfYLAFQdqGACvaLlsVrVFYkkC<-*
                   tevrs+Gp+s+ GfYLAFQd+G C++L++VrVFY+kC   
     fj16004   179 TEVRSFGPVSRSGFYLAFQDYGGCMSLIAVRVFYRKC    215  

SM00060: domain 1 of 2, from 343 to 435: score 37.1, E = 2.4e-06
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP..............
                      P++P+     ++++v++t      s+ l+W+pP ++++ ++  ++  
     fj16004   343    PSAPQA----VISSVNET------SLMLEWTPPrdsggredlvynii 379  

                   ................ivgYr..........ytltgLkPgaepwteYefr
                    ++ +++ +     ++ v+Y +++ + ++++  +++L ++    t+Y+f 
     fj16004   380 ckscgsgrgactrcgdNVQYAprqlglteprIYISDLLAH----TQYTFE 425  

                   VrAvngndaGeg<-*
                   ++Avng  +      
     fj16004   426 IQAVNG--VTDQ    435  

SM00060: domain 2 of 2, from 454 to 535: score 50.7, E = 1.9e-10
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr...
                      P+++s     + ++ t +      s+tlsW+ P+ +++ i+ Y+ + 
     fj16004   454    PSAVSI---MHQVSRTVD------SITLSWSQPdqpngvILDYElqy 491  

                   ...................ytltgLkPgaepwteYefrVrAvngndaGeg
                    +++ ++ + +  +++++++t+ gLk+g      Y+f+VrA++   aG+g
     fj16004   492 yekelseynataiksptntVTVQGLKAG----AIYVFQVRARTV--AGYG 535  

                   <-*
                      
     fj16004     -     -    

SM00220: domain 1 of 1, from 639 to 902: score 178.7, E = 5.7e-49
                   *->YellkklGkGaFGkVylardkk...tgrlvAiKvik........eri
                       ++ +++G G FG+V+ ++ k +++    vAiK +k++ ++++++++
     fj16004   639    VKIEQVIGAGEFGEVCSGHLKLpgkREIFVAIKTLKsgytekqrRDF 685  

                   lrEikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrg
                   l+E +i+ + dHPN+++L +v   ++ + +++E++e+  G+L ++l+++ 
     fj16004   686 LSEASIMGQfDHPNVIHLEGVVTKsTPVMIITEFMEN--GSLDSFLRQND 733  

                   rrglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hv
                   ++     ++  +   ++r i+ +++YL +++ +HRDL   NiL++s+ + 
     fj16004   734 GQ-----FTViQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSnlVC 778  

                   KlaDFGlArql............ttfvGTpeYmAPEvl...gYgkpavDi
                   K++DFGl+r+l++++++++ ++         + APE ++ ++++  a+D+
     fj16004   779 KVSDFGLSRFLeddtsdptytsaLGGKIPIRWTAPEAIqyrKFTS-ASDV 827  

                   WSlGcilyEllt.GkpPFp..qldlifkkig...........SpeakdLi
                   WS G++++E ++ G+ P+++ + + +++ i  +++ +++ + ++ + +L+
     fj16004   828 WSYGIVMWEVMSyGERPYWdmTNQDVINAIEqdyrlpppmdcPSALHQLM 877  

                   kklLvkdPekRlta.eaLedeldikaHPff<-*
                     +++kd ++R+  +++ +      ++  +   
     fj16004   878 LDCWQKDRNHRPKFgQIVN-----TLDKMI    902  

SM00219: domain 1 of 1, from 639 to 898: score 476.0, E = 1.8e-138
                   *->ltlgkkLGeGaFGeVykGtlk......ieVAVKtLkeda....keeF
                      ++ ++++G G+FGeV+ G+lk +++++i VA+KtLk++ +++++++F
     fj16004   639    VKIEQVIGAGEFGEVCSGHLKlpgkreIFVAIKTLKSGYtekqRRDF 685  

                   lrEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLl
                   l+Ea+iM ++  +HpN++ L Gv+t++        P+mi++E+me+G+L+
     fj16004   686 LSEASIMGQF--DHPNVIHLEGVVTKS-------TPVMIITEFMENGSLD 726  

                   dyLrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenk
                   ++Lr n +++++ +L+ +   IA+GM YL+++n+vHRDLAARN+Lv++n+
     fj16004   727 SFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNL 776  

                   vvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkd
                   v+K+sDFGLsR+l+dd     s+ +Y+++   ggk  +PirW+APE++++
     fj16004   777 VCKVSDFGLSRFLEDD----TSDPTYTSAL--GGK--IPIRWTAPEAIQY 818  

                   gkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyRl
                   +kFts+SDVWS+G+++WE++++Ge PY++     m+n++v++ +++ yRl
     fj16004   819 RKFTSASDVWSYGIVMWEVMSYGERPYWD-----MTNQDVINAIEQDYRL 863  

                   pkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFselverl<-*
                   p+P +        CP++l++lMl+CW+ d + RP F ++v  l   
     fj16004   864 PPPMD--------CPSALHQLMLDCWQKDRNHRPKFGQIVNTL    898  

SM00454: domain 1 of 1, from 928 to 995: score 93.9, E = 1.9e-23
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeelllltseedLkel
                      ++  s+++V eWLe+i+++qY++ F+ +g+++++ ++++ +ed++++
     fj16004   928    PDyTSFNTVDEWLEAIKMGQYKESFANAGFTSFDVVSQMMMEDILRV 974  

                   GitllGhRkkIlsaiqklkeq<-*
                   G+tl+Gh+kkIl++iq +++q   
     fj16004   975 GVTLAGHQKKILNSIQVMRAQ    995  

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