# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofj16183.fasta.nr -Q fj16183.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fj16183, 164 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6841383 sequences Expectation_n fit: rho(ln(x))= 4.6193+/-0.000181; mu= 9.9260+/- 0.010 mean_var=62.4645+/-12.162, 0's: 43 Z-trim: 53 B-trim: 0 in 0/66 Lambda= 0.162277 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62088062|dbj|BAD92478.1| Hypothetical protein D ( 164) 1119 269.7 1.2e-70 gi|114587607|ref|XP_001174187.1| PREDICTED: pyruva ( 326) 919 223.1 2.5e-56 gi|119585776|gb|EAW65372.1| pyruvate dehydrogenase ( 317) 917 222.6 3.4e-56 gi|387010|gb|AAA60054.1| pyruvate dehydrogenase E1 ( 335) 917 222.7 3.6e-56 gi|5912197|emb|CAB56017.1| hypothetical protein [H ( 341) 917 222.7 3.6e-56 gi|149242792|pdb|2OZL|B Chain B, Human Pyruvate De ( 341) 917 222.7 3.6e-56 gi|114587611|ref|XP_001174154.1| PREDICTED: hypoth ( 350) 917 222.7 3.7e-56 gi|114587613|ref|XP_001174208.1| PREDICTED: pyruva ( 352) 917 222.7 3.7e-56 gi|75055217|sp|Q5RE79.1|ODPB_PONAB Pyruvate dehydr ( 359) 917 222.7 3.7e-56 gi|189762|gb|AAA60053.1| pyruvate dehydrogenase E1 ( 359) 917 222.7 3.7e-56 gi|134044259|sp|P11177|ODPB_HUMAN Pyruvate dehydro ( 359) 917 222.7 3.7e-56 gi|109037784|ref|XP_001096445.1| PREDICTED: pyruva ( 359) 917 222.7 3.7e-56 gi|60832455|gb|AAX37011.1| pyruvate dehydrogenase ( 360) 917 222.7 3.7e-56 gi|114587609|ref|XP_001174202.1| PREDICTED: pyruva ( 368) 917 222.7 3.8e-56 gi|73985155|ref|XP_856518.1| PREDICTED: similar to ( 341) 906 220.1 2.1e-55 gi|73985153|ref|XP_533778.2| PREDICTED: similar to ( 359) 906 220.1 2.2e-55 gi|189754|gb|AAA88097.1| pyruvate dehydrogenase be ( 359) 903 219.4 3.6e-55 gi|126336185|ref|XP_001368844.1| PREDICTED: simila ( 389) 894 217.3 1.7e-54 gi|149728561|ref|XP_001489101.1| PREDICTED: simila ( 359) 887 215.7 4.9e-54 gi|33357460|pdb|1NI4|B Chain B, Human Pyruvate Deh ( 341) 885 215.2 6.5e-54 gi|116242689|sp|P11966.2|ODPB_BOVIN Pyruvate dehyd ( 359) 884 215.0 7.9e-54 gi|12805431|gb|AAH02188.1| Pdhb protein [Mus muscu ( 320) 876 213.0 2.7e-53 gi|74177597|dbj|BAE38906.1| unnamed protein produc ( 359) 876 213.1 2.9e-53 gi|46396509|sp|Q9D051|ODPB_MOUSE Pyruvate dehydrog ( 359) 876 213.1 2.9e-53 gi|448581|prf||1917268B pyruvate dehydrogenase:SUB ( 329) 872 212.1 5.2e-53 gi|122065728|sp|P49432|ODPB_RAT Pyruvate dehydroge ( 359) 871 211.9 6.5e-53 gi|148682296|gb|EDL14243.1| mCG18547 [Mus musculus ( 312) 864 210.2 1.8e-52 gi|31418897|gb|AAH53233.1| Pyruvate dehydrogenase ( 359) 833 203.0 3.1e-50 gi|60688141|gb|AAH91061.1| Pyruvate dehydrogenase ( 360) 830 202.3 5.1e-50 gi|47210341|emb|CAF96009.1| unnamed protein produc ( 360) 822 200.4 1.9e-49 gi|32484255|gb|AAH54318.1| PdhE1beta-1 protein [Xe ( 270) 819 199.6 2.4e-49 gi|1680661|gb|AAC60043.1| pyruvate dehydrogenase E ( 359) 819 199.7 3e-49 gi|49256544|gb|AAH71117.1| PdhE1beta-1 protein [Xe ( 360) 819 199.7 3e-49 gi|1680663|gb|AAC60044.1| pyruvate dehydrogenase E ( 339) 818 199.5 3.4e-49 gi|54261489|gb|AAH84292.1| PdhE1beta-2 protein [Xe ( 360) 818 199.5 3.6e-49 gi|50754481|ref|XP_414404.1| PREDICTED: similar to ( 359) 806 196.7 2.5e-48 gi|156219730|gb|EDO40608.1| predicted protein [Nem ( 364) 761 186.2 3.7e-45 gi|190589690|gb|EDV29712.1| expressed hypothetical ( 319) 741 181.4 8.7e-44 gi|115720316|ref|XP_785251.2| PREDICTED: similar t (1079) 732 179.8 9.3e-43 gi|193895587|gb|EDV94453.1| GH19645 [Drosophila gr ( 360) 724 177.5 1.5e-42 gi|156548765|ref|XP_001604584.1| PREDICTED: simila ( 362) 723 177.3 1.8e-42 gi|193917500|gb|EDW16367.1| GI22271 [Drosophila mo ( 356) 721 176.8 2.4e-42 gi|194151839|gb|EDW67273.1| GJ24064 [Drosophila vi ( 360) 720 176.6 2.9e-42 gi|74958456|sp|O44451.2|ODPB_CAEEL Pyruvate dehydr ( 352) 713 174.9 8.8e-42 gi|187022895|emb|CAP37975.1| Hypothetical protein ( 352) 710 174.2 1.4e-41 gi|54638027|gb|EAL27429.1| GA11252-PA [Drosophila ( 365) 707 173.5 2.4e-41 gi|194101977|gb|EDW24020.1| GL23909 [Drosophila pe ( 365) 707 173.5 2.4e-41 gi|55242737|gb|EAA07168.2| AGAP010421-PA [Anophele ( 355) 706 173.3 2.8e-41 gi|193716024|ref|XP_001948556.1| PREDICTED: simila ( 352) 705 173.0 3.2e-41 gi|114193009|gb|EAU34709.1| pyruvate dehydrogenase ( 374) 705 173.1 3.4e-41 >>gi|62088062|dbj|BAD92478.1| Hypothetical protein DKFZp (164 aa) initn: 1119 init1: 1119 opt: 1119 Z-score: 1423.5 bits: 269.7 E(): 1.2e-70 Smith-Waterman score: 1119; 100.000% identity (100.000% similar) in 164 aa overlap (1-164:1-164) 10 20 30 40 50 60 fj1618 FVCYCLLLFLVFLTSTFLILQAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 FVCYCLLLFLVFLTSTFLILQAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPV 10 20 30 40 50 60 70 80 90 100 110 120 fj1618 PIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 PIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVL 70 80 90 100 110 120 130 140 150 160 fj1618 ENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGKKTKIYKQYF :::::::::::::::::::::::::::::::::::::::::::: gi|620 ENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGKKTKIYKQYF 130 140 150 160 >>gi|114587607|ref|XP_001174187.1| PREDICTED: pyruvate d (326 aa) initn: 917 init1: 917 opt: 919 Z-score: 1166.4 bits: 223.1 E(): 2.5e-56 Smith-Waterman score: 919; 95.683% identity (97.842% similar) in 139 aa overlap (21-159:68-206) 10 20 30 40 50 fj1618 FVCYCLLLFLVFLTSTFLILQAGLRPICEFMTFNFSMQAIDQVINSAAKT .::::::::::::::::::::::::::::: gi|114 AINQGMDEELERDEKVFLLGEEVAQYDGAYKAGLRPICEFMTFNFSMQAIDQVINSAAKT 40 50 60 70 80 90 60 70 80 90 100 110 fj1618 YYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 YYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSA 100 110 120 130 140 150 120 130 140 150 160 fj1618 IRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGKKTKIYKQYF :::::::::::::::::::::::::::::::::::::::::::: . . gi|114 IRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCL 160 170 180 190 200 210 gi|114 EAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIM 220 230 240 250 260 270 >>gi|119585776|gb|EAW65372.1| pyruvate dehydrogenase (li (317 aa) initn: 917 init1: 917 opt: 917 Z-score: 1164.0 bits: 222.6 E(): 3.4e-56 Smith-Waterman score: 917; 96.377% identity (97.826% similar) in 138 aa overlap (22-159:60-197) 10 20 30 40 50 fj1618 FVCYCLLLFLVFLTSTFLILQAGLRPICEFMTFNFSMQAIDQVINSAAKTY :::::::::::::::::::::::::::::: gi|119 GLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTY 30 40 50 60 70 80 60 70 80 90 100 110 fj1618 YMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 YMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAI 90 100 110 120 130 140 120 130 140 150 160 fj1618 RDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGKKTKIYKQYF ::::::::::::::::::::::::::::::::::::::::::: . . gi|119 RDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLE 150 160 170 180 190 200 gi|119 AAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIME 210 220 230 240 250 260 >>gi|387010|gb|AAA60054.1| pyruvate dehydrogenase E1-bet (335 aa) initn: 917 init1: 917 opt: 917 Z-score: 1163.7 bits: 222.7 E(): 3.6e-56 Smith-Waterman score: 917; 96.377% identity (97.826% similar) in 138 aa overlap (22-159:78-215) 10 20 30 40 50 fj1618 FVCYCLLLFLVFLTSTFLILQAGLRPICEFMTFNFSMQAIDQVINSAAKTY :::::::::::::::::::::::::::::: gi|387 GLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTY 50 60 70 80 90 100 60 70 80 90 100 110 fj1618 YMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|387 YMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAI 110 120 130 140 150 160 120 130 140 150 160 fj1618 RDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGKKTKIYKQYF ::::::::::::::::::::::::::::::::::::::::::: . . gi|387 RDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLE 170 180 190 200 210 220 gi|387 AAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIME 230 240 250 260 270 280 >>gi|5912197|emb|CAB56017.1| hypothetical protein [Homo (341 aa) initn: 917 init1: 917 opt: 917 Z-score: 1163.6 bits: 222.7 E(): 3.6e-56 Smith-Waterman score: 917; 96.377% identity (97.826% similar) in 138 aa overlap (22-159:84-221) 10 20 30 40 50 fj1618 FVCYCLLLFLVFLTSTFLILQAGLRPICEFMTFNFSMQAIDQVINSAAKTY :::::::::::::::::::::::::::::: gi|591 GLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTY 60 70 80 90 100 110 60 70 80 90 100 110 fj1618 YMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|591 YMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAI 120 130 140 150 160 170 120 130 140 150 160 fj1618 RDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGKKTKIYKQYF ::::::::::::::::::::::::::::::::::::::::::: . . gi|591 RDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLE 180 190 200 210 220 230 gi|591 AAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIME 240 250 260 270 280 290 >>gi|149242792|pdb|2OZL|B Chain B, Human Pyruvate Dehydr (341 aa) initn: 917 init1: 917 opt: 917 Z-score: 1163.6 bits: 222.7 E(): 3.6e-56 Smith-Waterman score: 917; 96.377% identity (97.826% similar) in 138 aa overlap (22-159:84-221) 10 20 30 40 50 fj1618 FVCYCLLLFLVFLTSTFLILQAGLRPICEFMTFNFSMQAIDQVINSAAKTY :::::::::::::::::::::::::::::: gi|149 GLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTY 60 70 80 90 100 110 60 70 80 90 100 110 fj1618 YMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 YMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAI 120 130 140 150 160 170 120 130 140 150 160 fj1618 RDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGKKTKIYKQYF ::::::::::::::::::::::::::::::::::::::::::: . . gi|149 RDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLE 180 190 200 210 220 230 gi|149 AAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIME 240 250 260 270 280 290 >>gi|114587611|ref|XP_001174154.1| PREDICTED: hypothetic (350 aa) initn: 917 init1: 917 opt: 917 Z-score: 1163.5 bits: 222.7 E(): 3.7e-56 Smith-Waterman score: 917; 96.377% identity (97.826% similar) in 138 aa overlap (22-159:84-221) 10 20 30 40 50 fj1618 FVCYCLLLFLVFLTSTFLILQAGLRPICEFMTFNFSMQAIDQVINSAAKTY :::::::::::::::::::::::::::::: gi|114 GLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTY 60 70 80 90 100 110 60 70 80 90 100 110 fj1618 YMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 YMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAI 120 130 140 150 160 170 120 130 140 150 160 fj1618 RDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGKKTKIYKQYF ::::::::::::::::::::::::::::::::::::::::::: . . gi|114 RDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLE 180 190 200 210 220 230 gi|114 AAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIME 240 250 260 270 280 290 >>gi|114587613|ref|XP_001174208.1| PREDICTED: pyruvate d (352 aa) initn: 917 init1: 917 opt: 917 Z-score: 1163.4 bits: 222.7 E(): 3.7e-56 Smith-Waterman score: 917; 96.377% identity (97.826% similar) in 138 aa overlap (22-159:102-239) 10 20 30 40 50 fj1618 FVCYCLLLFLVFLTSTFLILQAGLRPICEFMTFNFSMQAIDQVINSAAKTY :::::::::::::::::::::::::::::: gi|114 GLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTY 80 90 100 110 120 130 60 70 80 90 100 110 fj1618 YMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 YMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAI 140 150 160 170 180 190 120 130 140 150 160 fj1618 RDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGKKTKIYKQYF ::::::::::::::::::::::::::::::::::::::::::: . . gi|114 RDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLE 200 210 220 230 240 250 gi|114 AAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIME 260 270 280 290 300 310 >>gi|75055217|sp|Q5RE79.1|ODPB_PONAB Pyruvate dehydrogen (359 aa) initn: 917 init1: 917 opt: 917 Z-score: 1163.3 bits: 222.7 E(): 3.7e-56 Smith-Waterman score: 917; 96.377% identity (97.826% similar) in 138 aa overlap (22-159:102-239) 10 20 30 40 50 fj1618 FVCYCLLLFLVFLTSTFLILQAGLRPICEFMTFNFSMQAIDQVINSAAKTY :::::::::::::::::::::::::::::: gi|750 GLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTY 80 90 100 110 120 130 60 70 80 90 100 110 fj1618 YMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 YMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAI 140 150 160 170 180 190 120 130 140 150 160 fj1618 RDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGKKTKIYKQYF ::::::::::::::::::::::::::::::::::::::::::: . . gi|750 RDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLE 200 210 220 230 240 250 gi|750 AAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIME 260 270 280 290 300 310 >>gi|189762|gb|AAA60053.1| pyruvate dehydrogenase E1-bet (359 aa) initn: 917 init1: 917 opt: 917 Z-score: 1163.3 bits: 222.7 E(): 3.7e-56 Smith-Waterman score: 917; 96.377% identity (97.826% similar) in 138 aa overlap (22-159:102-239) 10 20 30 40 50 fj1618 FVCYCLLLFLVFLTSTFLILQAGLRPICEFMTFNFSMQAIDQVINSAAKTY :::::::::::::::::::::::::::::: gi|189 GLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTY 80 90 100 110 120 130 60 70 80 90 100 110 fj1618 YMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|189 YMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAI 140 150 160 170 180 190 120 130 140 150 160 fj1618 RDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGKKTKIYKQYF ::::::::::::::::::::::::::::::::::::::::::: . . gi|189 RDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLE 200 210 220 230 240 250 gi|189 AAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIME 260 270 280 290 300 310 164 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Sun Aug 10 17:42:50 2008 done: Sun Aug 10 17:45:49 2008 Total Scan time: 593.730 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]