hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-17455059/chunk_1/iprscan-20080810-17455059.nocrc
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Query sequence: fj16183
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF02779.14.fs Transketolase, pyrimidine binding domain   122.6    9.5e-36   1
PF02779.14.ls Transketolase, pyrimidine binding domain    45.7    1.4e-10   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF02779.14.ls   1/1       1   128 [.     1   189 []    45.7  1.4e-10
PF02779.14.fs   1/1      22   128 ..    72   189 .]   122.6  9.5e-36

Alignments of top-scoring domains:
PF02779.14.ls: domain 1 of 1, from 1 to 128: score 45.7, E = 1.4e-10
                   *->kkiatrkAsgeALaelaeedprvvgggaDvgaygGtftvtkgllhpq
                                  +  ++  +  v++         +tf+        q
     fj16183     1    ------------FVCYCLLLFLVFL--------TSTFLIL------Q 21   

                   gegRvidtgiaEqamvgianGmAlhGpnllppveatFgdFanpAfdQiya
                                           +G  l+p++e++ ++F+++A+dQ+++
     fj16183    22 ------------------------AG--LRPICEFMTFNFSMQAIDQVIN 45   

                   daairryaalgklpvpfvvtrdpiGvGedGPtHqsqedeaylraiPgenN
                    aa++ y+++g +pvp +v+r+p G+ +  ++++sq   a++ ++Pg   
     fj16183    46 SAAKTYYMSGGLQPVP-IVFRGPNGASAGVAAQHSQCFAAWYGHCPG--- 91   

                   lkVvrPsdpaetkglLraAirsdrddrdPvvlrlprqllrhk<-*
                   lkVv P + +++kgl ++Air    d++Pvv+++ + +++ +   
     fj16183    92 LKVVSPWNSEDAKGLIKSAIR----DNNPVVVLENELMYG-V    128  

PF02779.14.fs: domain 1 of 1, from 22 to 128: score 122.6, E = 9.5e-36
                   *->hGpnllppveatFgdFanpAfdQiyadaairryaalgklpvpfvvtr
                      +G  l+p++e++ ++F+++A+dQ+++ aa++ y+++g +pvp +v+r
     fj16183    22    AG--LRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVP-IVFR 65   

                   dpiGvGedGPtHqsqedeaylraiPgenNlkVvrPsdpaetkglLraAir
                   +p G+ +  ++++sq   a++ ++Pg   lkVv P + +++kgl ++Air
     fj16183    66 GPNGASAGVAAQHSQCFAAWYGHCPG---LKVVSPWNSEDAKGLIKSAIR 112  

                   sdrddrdPvvlrlprqllrhk<-*
                       d++Pvv+++ + +++ +   
     fj16183   113 ----DNNPVVVLENELMYG-V    128  

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