hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-17515635/chunk_1/iprscan-20080810-17515635.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj16347 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07714.7.ls Protein tyrosine kinase 474.6 1.1e-139 1 PF07714.7.fs Protein tyrosine kinase 472.8 4e-139 1 PF00041.11.ls Fibronectin type III domain 173.4 5.3e-49 3 PF00041.11.fs Fibronectin type III domain 167.4 2e-47 3 PF00069.15.ls Protein kinase domain 164.7 2.2e-46 1 PF00069.15.fs Protein kinase domain 162.9 3.7e-46 1 PF07974.3.fs EGF-like domain 57.2 5.9e-15 3 PF07974.3.ls EGF-like domain 54.5 3.4e-13 2 PF00008.17.fs EGF-like domain 36.7 2.2e-09 4 PF01414.9.fs Delta serrate ligand 26.7 1.4e-07 4 PF00008.17.ls EGF-like domain 26.2 0.00011 2 PF00053.14.fs Laminin EGF-like (Domains III and V) 17.6 0.0002 2 PF00053.14.ls Laminin EGF-like (Domains III and V) 9.9 0.0021 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00053.14.ls 1/1 252 301 .. 1 59 [] 9.9 0.0021 PF07974.3.fs 1/3 257 284 .. 1 37 [] 27.9 8.5e-07 PF07974.3.ls 1/2 257 284 .. 1 37 [] 29.6 1e-05 PF00053.14.fs 1/2 263 301 .. 10 59 .] 16.8 0.00034 PF07974.3.ls 2/2 348 373 .. 1 37 [] 24.9 0.00027 PF00041.11.ls 1/3 477 562 .. 1 84 [] 45.2 2e-10 PF00041.11.fs 1/3 477 562 .. 1 84 [] 43.2 8.9e-12 PF00041.11.ls 2/3 576 659 .. 1 84 [] 57.5 4e-14 PF00041.11.fs 2/3 576 659 .. 1 84 [] 55.5 2.6e-15 PF00041.11.fs 3/3 672 757 .. 1 84 [] 68.7 4.5e-19 PF00041.11.ls 3/3 672 757 .. 1 84 [] 70.7 4.5e-18 PF07714.7.fs 1/1 857 1125 .. 1 272 [] 472.8 4e-139 PF07714.7.ls 1/1 857 1125 .. 1 272 [] 474.6 1.1e-139 PF00069.15.ls 1/1 857 1125 .. 1 287 [] 164.7 2.2e-46 PF00069.15.fs 1/1 857 1125 .. 1 287 [] 162.9 3.7e-46 Alignments of top-scoring domains: PF00053.14.ls: domain 1 of 1, from 252 to 301: score 9.9, E = 0.0021 *->CdCnphGslsd..dtCdsddelfgeetGqClkCkpnvtGrrCdr.Ck +Cn++ + +++ C+ tG+C C p+++Gr C+ C+ fj16347 252 -ECNHLCTACMnnGVCHE-------DTGECI-CPPGFMGRTCEKaCE 289 pGyyglpsgdpgqgC<-* ++g+ + + C fj16347 290 LHTFGR---TCKERC 301 PF07974.3.fs: domain 1 of 3, from 257 to 284: score 27.9, E = 8.5e-07 *->C..CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+ C + +G+C+ + +g C C++g + G +C fj16347 257 CtaCMN-NGVCHED------TGECICPPG----FMGRTC 284 PF07974.3.ls: domain 1 of 2, from 257 to 284: score 29.6, E = 1e-05 *->C..CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+ C + +G+C+ + +g C C++g + G +C fj16347 257 CtaCMN-NGVCHED------TGECICPPG----FMGRTC 284 PF00053.14.fs: domain 1 of 2, from 263 to 301: score 16.8, E = 0.00034 *->sddtCdsddelfgeetGqClkCkpnvtGrrCdr.CkpGyyglpsgdp + + C+ tG+C C p+++Gr C+ C+ ++g+ + fj16347 263 N-GVCHE-------DTGECI-CPPGFMGRTCEKaCELHTFGR---TC 297 gqgC<-* + C fj16347 298 KERC 301 PF07974.3.ls: domain 2 of 2, from 348 to 373: score 24.9, E = 0.00027 *->C.CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C+Cn+ + C++++g C C++g +qG +C fj16347 348 CsCNN-GEMCDRFQG-------CLCSPG----WQGLQC 373 PF00041.11.ls: domain 1 of 3, from 477 to 562: score 45.2, E = 2e-10 *->PsaP.tnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngg +++P + v+d++ + ++++ s + g+gpi + ++ y +p+n+ fj16347 477 LPKPlNAPNVIDTGHNFAVINISSEPyfGDGPIKSKKLLY-KPVNHY 522 e.wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* e w++++v++ +tl+ L+P teY+++Vq v +g +G+ fj16347 523 EaWQHIQVTNEI--VTLNYLEPRTEYELCVQLVRRGEgGEGH 562 PF00041.11.fs: domain 1 of 3, from 477 to 562: score 43.2, E = 8.9e-12 *->PsaP.tnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngg +++P + v+d++ + ++++ s + g+gpi + ++ y +p+n+ fj16347 477 LPKPlNAPNVIDTGHNFAVINISSEPyfGDGPIKSKKLLY-KPVNHY 522 e.wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* e w++++v++ +tl+ L+P teY+++Vq v +g +G+ fj16347 523 EaWQHIQVTNEI--VTLNYLEPRTEYELCVQLVRRGEgGEGH 562 PF00041.11.ls: domain 2 of 3, from 576 to 659: score 57.5, E = 4e-14 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpknggew +++P++l + + t+l l+W+p ++ + + + ev+ R ++ +++ fj16347 576 LPPPRGLNLLPKSQTTLNLTWQPIFpSSEDDFYVEVERR-SVQKSDQ 621 keltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* +++ vpg+ ts+ l++L P +Y+vr + vn++ +G++S fj16347 622 QNIKVPGNLTSVLLNNLHPREQYVVRAR-VNTKAqGEWS 659 PF00041.11.fs: domain 2 of 3, from 576 to 659: score 55.5, E = 2.6e-15 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpknggew +++P++l + + t+l l+W+p ++ + + + ev+ R ++ +++ fj16347 576 LPPPRGLNLLPKSQTTLNLTWQPIFpSSEDDFYVEVERR-SVQKSDQ 621 keltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* +++ vpg+ ts+ l++L P +Y+vr + vn++ +G++S fj16347 622 QNIKVPGNLTSVLLNNLHPREQYVVRAR-VNTKAqGEWS 659 PF00041.11.fs: domain 3 of 3, from 672 to 757: score 68.7, E = 4.5e-19 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpknggewk P++P+n++++++t +s+++sW+ + + i++ +++y + ++++e++ fj16347 672 PPQPENIKISNITHSSAVISWTILD-GYSISSITIRY-KVQGKNEDQ 716 elt..vpgttt.sytltgLkPgteYtvrVqAvnggG.GpeS<-* +++ ++++ t ++y+l+gL+P t Y+v + A n++G++ + fj16347 717 HVDvkIKNATItQYQLKGLEPETAYQVDIFAENNIGsSNPA 757 PF00041.11.ls: domain 3 of 3, from 672 to 757: score 70.7, E = 4.5e-18 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpknggewk P++P+n++++++t +s+++sW+ + + i++ +++y + ++++e++ fj16347 672 PPQPENIKISNITHSSAVISWTILD-GYSISSITIRY-KVQGKNEDQ 716 elt..vpgttt.sytltgLkPgteYtvrVqAvnggG.GpeS<-* +++ ++++ t ++y+l+gL+P t Y+v + A n++G++ + fj16347 717 HVDvkIKNATItQYQLKGLEPETAYQVDIFAENNIGsSNPA 757 PF07714.7.fs: domain 1 of 1, from 857 to 1125: score 472.8, E = 4e-139 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeeie +k++ ++GeG+FG V k++ k +dg +++ A+K +ke +as ++ fj16347 857 IKFQDVIGEGNFGQVLKARIK--KDGLRMDAAIKRMKE-YASKDD-- 898 redFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGdL ++dF E+++++klG+HpNi++LlG+c + ++ ly+ Ey+++G+L fj16347 899 HRDFAGELEVLCKLGHHPNIINLLGACEH-RGY----LYLAIEYAPHGNL 943 ldfLrkhr.............egrpLtlkdLlsfalQiAkGMeYLesknf ldfLrk r ++++ ++ + L+ ++Ll+fa+++A+GM+YL++k+f fj16347 944 LDFLRKSRvletdpafaiansTASTLSSQQLLHFAADVARGMDYLSQKQF 993 vHRDLAARNcLVsenlvVKIsDFGLaRdiynddyYvrkkgggklPvkWmA +HRDLAARN+LV+en v+KI+DFGL+R + Y +kk+ g+lPv+WmA fj16347 994 IHRDLAARNILVGENYVAKIADFGLSRGQ---EVY-VKKTMGRLPVRWMA 1039 PEslkygkFtskSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedG Esl+y+++t+ SDVWS+GVlLWEi++lG++P Y gm+ +e++e+l +G fj16347 1040 IESLNYSVYTTNSDVWSYGVLLWEIVSLGGTP-YCGMTCAELYEKL-PQG 1087 yRLprPenCPdelYdlMlqCWaedPedRPtFselveeL<-* yRL++P nC de+YdlM+qCW+e+P +RP+F++++ L fj16347 1088 YRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSL 1125 PF07714.7.ls: domain 1 of 1, from 857 to 1125: score 474.6, E = 1.1e-139 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeeie +k++ ++GeG+FG V k++ k +dg +++ A+K +ke +as ++ fj16347 857 IKFQDVIGEGNFGQVLKARIK--KDGLRMDAAIKRMKE-YASKDD-- 898 redFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGdL ++dF E+++++klG+HpNi++LlG+c + ++ ly+ Ey+++G+L fj16347 899 HRDFAGELEVLCKLGHHPNIINLLGACEH-RGY----LYLAIEYAPHGNL 943 ldfLrkhr.............egrpLtlkdLlsfalQiAkGMeYLesknf ldfLrk r ++++ ++ + L+ ++Ll+fa+++A+GM+YL++k+f fj16347 944 LDFLRKSRvletdpafaiansTASTLSSQQLLHFAADVARGMDYLSQKQF 993 vHRDLAARNcLVsenlvVKIsDFGLaRdiynddyYvrkkgggklPvkWmA +HRDLAARN+LV+en v+KI+DFGL+R + Y +kk+ g+lPv+WmA fj16347 994 IHRDLAARNILVGENYVAKIADFGLSRGQ---EVY-VKKTMGRLPVRWMA 1039 PEslkygkFtskSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedG Esl+y+++t+ SDVWS+GVlLWEi++lG++P Y gm+ +e++e+l +G fj16347 1040 IESLNYSVYTTNSDVWSYGVLLWEIVSLGGTP-YCGMTCAELYEKL-PQG 1087 yRLprPenCPdelYdlMlqCWaedPedRPtFselveeL<-* yRL++P nC de+YdlM+qCW+e+P +RP+F++++ L fj16347 1088 YRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSL 1125 PF00069.15.ls: domain 1 of 1, from 857 to 1125: score 164.7, E = 2.2e-46 *->yelleklGsGsfGtVykakhkgtgk..iVAvKiikkrkekskkdkta +++ ++G+G+fG+V ka+ k++g + A+K++k k+ d ++ fj16347 857 IKFQDVIGEGNFGQVLKARIKKDGLrmDAAIKRMKEYASKD--DHRD 901 rrlsEiqilkrL.sHpNIvrlidvfedkdhlylVlEycegGLrvldLfdy + E+++l +L++HpNI+ l++++e +++lyl Ey+++G L d+ fj16347 902 FAG-ELEVLCKLgHHPNIINLLGACEHRGYLYLAIEYAPHG----NLLDF 946 ls.....e........trrkgpllfsedeakkialQilrgleYLHsngii l++++ e+++ + +l s +++ ++a ++rg++YL ++ +i fj16347 947 LRksrvlEtdpafaiaNSTASTL--SSQQLLHFAADVARGMDYLSQKQFI 994 HRDLKPeNILldnngvvdaflKiaDFGlAkklst.sss.lttfvGTpwYm HRDL NIL+ +n+v KiaDFGl++ + +++ t ++m fj16347 995 HRDLAARNILVGENYVA----KIADFGLSRG--QeVYVkKTMGRLPVRWM 1038 APEvllggngygtkvDvWSlGvilyellt.GkpPFsgevqds.ldqlqli A E l+ ++ y+t +DvWS+Gv+l+e ++ G +P++g + + ++++ fj16347 1039 AIESLN-YSVYTTNSDVWSYGVLLWEIVSlGGTPYCGM---TcAELYEKL 1084 rkilgpplefdspewdsisrsefrrlpnlseeakdLikkcLnkDPskRlt + + + + +++ +e dL++ c++ +P++R++ fj16347 1085 PQGYRLEKPLNCD-----------------DEVYDLMRQCWREKPYERPS 1117 aeeilqHPwf<-* +++il + + fj16347 1118 FAQILVS--L 1125 PF00069.15.fs: domain 1 of 1, from 857 to 1125: score 162.9, E = 3.7e-46 *->yelleklGsGsfGtVykakhkgtgk..iVAvKiikkrkekskkdkta +++ ++G+G+fG+V ka+ k++g + A+K++k k+ d ++ fj16347 857 IKFQDVIGEGNFGQVLKARIKKDGLrmDAAIKRMKEYASKD--DHRD 901 rrlsEiqilkrL.sHpNIvrlidvfedkdhlylVlEycegGLrvldLfdy + E+++l +L++HpNI+ l++++e +++lyl Ey+++G L d+ fj16347 902 FAG-ELEVLCKLgHHPNIINLLGACEHRGYLYLAIEYAPHG----NLLDF 946 ls.....e........trrkgpllfsedeakkialQilrgleYLHsngii l++++ e+++ + +l s +++ ++a ++rg++YL ++ +i fj16347 947 LRksrvlEtdpafaiaNSTASTL--SSQQLLHFAADVARGMDYLSQKQFI 994 HRDLKPeNILldnngvvdaflKiaDFGlAkklst.sss.lttfvGTpwYm HRDL NIL+ +n+v KiaDFGl++ + +++ t ++m fj16347 995 HRDLAARNILVGENYVA----KIADFGLSRG--QeVYVkKTMGRLPVRWM 1038 APEvllggngygtkvDvWSlGvilyellt.GkpPFsgevqds.ldqlqli A E l+ ++ y+t +DvWS+Gv+l+e ++ G +P++g + + ++++ fj16347 1039 AIESLN-YSVYTTNSDVWSYGVLLWEIVSlGGTPYCGM---TcAELYEKL 1084 rkilgpplefdspewdsisrsefrrlpnlseeakdLikkcLnkDPskRlt + + + + +++ +e dL++ c++ +P++R++ fj16347 1085 PQGYRLEKPLNCD-----------------DEVYDLMRQCWREKPYERPS 1117 aeeilqHPwf<-* +++il + + fj16347 1118 FAQILVS--L 1125 //