hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-17515635/chunk_1/iprscan-20080810-17515635.nocrc
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Query sequence: fj16347
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00219                                                 475.8   2.1e-138   1
SM00220                                                 163.6      2e-44   1
SM00060                                                 105.6    5.8e-27   3
SM00181                                                  41.4    1.2e-07   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00181    1/3     252   285 ..     1    32 []    29.1  0.00059
SM00181    2/3     300   332 ..     1    32 []    10.3       31
SM00181    3/3     343   374 ..     1    32 []     1.9  1.7e+02
SM00060    1/3     477   561 ..     1    69 []    20.5     0.24
SM00060    2/3     576   658 ..     1    69 []    31.3  0.00014
SM00060    3/3     672   754 ..     1    69 []    53.8  2.2e-11
SM00219    1/1     857  1125 ..     1   280 []   475.8 2.1e-138
SM00220    1/1     857  1129 ..     1   231 []   163.6    2e-44

Alignments of top-scoring domains:
SM00181: domain 1 of 3, from 252 to 285: score 29.1, E = 0.00059
                   *->eCa....pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-*
                      eC +  + C n+     G+C++++ +C Cp pG++g++Ce   
     fj16347   252    ECNhlctACMNN-----GVCHedTGECiCP-PGFMGrTCE    285  

SM00181: domain 2 of 3, from 300 to 332: score 10.3, E = 31
                   *->eCa...pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-*
                       C+++++C          C+++ y C+C+  G++g +C    
     fj16347   300    RCSgqeGCKSYV-----FCLpdPYGCsCA-TGWKGlQCN    332  

SM00181: domain 3 of 3, from 343 to 374: score 1.9, E = 1.7e+02
                   *->eCa...pCsnGgtEqnGtCi.sytC.CpgpGytg.rCe<-*
                      +C  +  C nG       C +   C C  pG++g +Ce   
     fj16347   343    DCKlrcSCNNGE-----MCDrFQGClCS-PGWQGlQCE    374  

SM00060: domain 1 of 3, from 477 to 561: score 20.5, E = 0.24
                   *->PgpPsnptelrvtdvtststsdltsvtlsWe.pP..........ivg
                       + P n   + v d++ +       +++  +++P+ ++++ +++ + 
     fj16347   477    LPKPLNA--PNVIDTGHN------FAVINISsEPyfgdgpikskKLL 515  

                   Yr.................ytltgLkPgaepwteYefrVrAvngndaGeg
                   Y++++  + ++  +++++ +tl  L+P     teYe  V+ v ++++Geg
     fj16347   516 YKpvnhyeawqhiqvtneiVTLNYLEPR----TEYELCVQLVRRGEGGEG 561  

                   <-*
                      
     fj16347     -     -    

SM00060: domain 2 of 3, from 576 to 658: score 31.3, E = 0.00014
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP.....ivgYr....
                       +pP++   l + + + t      +++l+W+p  ++++   Y+++++
     fj16347   576    LPPPRG---LNLLPKSQT------TLNLTWQPIfpsseDDFYVever 613  

                   ...................ytltgLkPgaepwteYefrVrAvngndaGeg
                   ++++++++++ +++++ +++ l +L+P      +Y++r r+ ++ ++Ge 
     fj16347   614 rsvqksdqqnikvpgnltsVLLNNLHPR----EQYVVRARVNTK-AQGEW 658  

                   <-*
                      
     fj16347     -     -    

SM00060: domain 3 of 3, from 672 to 754: score 53.8, E = 2.2e-11
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP........ivgYr.
                      P+ P+n   ++++++t +      s+++sW+  ++++ ++ +++Y++
     fj16347   672    PPQPEN---IKISNITHS------SAVISWTILdgysissiTIRYKv 709  

                   ....................ytltgLkPgaepwteYefrVrAvngndaGe
                   +++++++ ++++ ++ + ++y l+gL+P     t Y++ + A+n    G+
     fj16347   710 qgknedqhvdvkiknatitqYQLKGLEPE----TAYQVDIFAENN--IGS 753  

                   g<-*
                   +   
     fj16347   754 S    754  

SM00219: domain 1 of 1, from 857 to 1125: score 475.8, E = 2.1e-138
                   *->ltlgkkLGeGaFGeVykGtlk.....ieVAVKtLkeda....keeFl
                      +++ +++GeG+FG+V k++ k+++ +++ A+K +ke+a+++++++F 
     fj16347   857    IKFQDVIGEGNFGQVLKARIKkdglrMDAAIKRMKEYAskddHRDFA 903  

                   rEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLld
                    E+++++klG +HpNi++LlG+c +        + l++  Ey+++G+Lld
     fj16347   904 GELEVLCKLG-HHPNIINLLGACEHR-------GYLYLAIEYAPHGNLLD 945  

                   yLrknrpk...............lslsdLlsfAlQIAkGMeYLesknfvH
                   +Lrk+r  ++++     +++ ++ls ++Ll+fA ++A+GM+YL++k+f+H
     fj16347   946 FLRKSRVLetdpafaianstastLSSQQLLHFAADVARGMDYLSQKQFIH 995  

                   RDLAARNcLvgenkvvKIsDFGLsRdlyddDkkGeskdyYrkkggkggkt
                   RDLAARN+Lvgen+v+KI+DFGLsR  + +        ++++     g+ 
     fj16347   996 RDLAARNILVGENYVAKIADFGLSRGQEVY--------VKKT----MGR- 1032 

                   llPirWmAPEslkdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfms
                    lP+rWmA+Esl+++++t+ SDVWS+GVlLWEi +lG++PY g     m+
     fj16347  1033 -LPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCG-----MT 1076 

                   neevleylkkGyRlpkPendlpiSsvtCPdelYdlMlqCWaedPedRPtF
                    +e++e+l +GyRl+kP n        C de+YdlM+qCW+e+P +RP+F
     fj16347  1077 CAELYEKLPQGYRLEKPLN--------CDDEVYDLMRQCWREKPYERPSF 1118 

                   selverl<-*
                   +++   l   
     fj16347  1119 AQILVSL    1125 

SM00220: domain 1 of 1, from 857 to 1129: score 163.6, E = 2e-44
                   *->YellkklGkGaFGkVylardkk..tgrlvAiKvik........eril
                       ++ +++G+G FG+V +ar kk++     AiK++k+  ++++++++ 
     fj16347   857    IKFQDVIGEGNFGQVLKARIKKdgLRMDAAIKRMKeyaskddhRDFA 903  

                   rEikiLkk..dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrg
                    E+++L k ++HPNI++L++++e++++lyl  Ey+++  G+L+d+l+k +
     fj16347   904 GELEVLCKlgHHPNIINLLGACEHrGYLYLAIEYAPH--GNLLDFLRKSR 951  

                   rrglr..........kvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPe
                      +++     +++ + ls ++  ++++ ++++++YL ++++iHRDL   
     fj16347   952 VLETDpafaianstaSTLSSqQLLHFAADVARGMDYLSQKQFIHRDLAAR 1001 

                   NiLLds..hvKlaDFGlArql......ttfvGTpeYmAPEvl...gYgkp
                   NiL+ ++ + K+aDFGl+r  +   ++t       +mA E l+ + Y++ 
     fj16347  1002 NILVGEnyVAKIADFGLSRGQevyvkkTMGRLPVRWMAIESLnysVYTT- 1050 

                   avDiWSlGcilyEllt.GkpPFp..qldlifkkig...........Spea
                    +D+WS G++l+E ++ G +P+++ + +++++k+  +++ +++ + ++e+
     fj16347  1051 NSDVWSYGVLLWEIVSlGGTPYCgmTCAELYEKLPqgyrlekplncDDEV 1100 

                   kdLikklLvkdPekRlta.eaLedeldikaHPff<-*
                    dL++++++  P +R++  ++L       +   +   
     fj16347  1101 YDLMRQCWREKPYERPSFaQILV-----SLNRML    1129 

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