hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-10231447/chunk_1/iprscan-20090618-10231447.nocrc
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Query sequence: fj16913
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00566.9.fs TBC domain                                     142.5      1e-39   1
PF00566.9.ls TBC domain                                     138.9    1.3e-38   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00566.9.fs   1/1     400   603 ..     1   209 [.   142.5    1e-39
PF00566.9.ls   1/1     400   616 ..     1   219 []   138.9  1.3e-38

Alignments of top-scoring domains:
PF00566.9.fs: domain 1 of 1, from 400 to 603: score 142.5, E = 1e-39
                   *->vkeGvpsstrakVWavcsgAyqlrYAsageYerllrrgdekesqavd
                       + G pss rak W  +s+   l   ++g +e+l r    +     d
     fj16913   400    CRKGIPSSLRAKAWQYLSNSKELLEQNPGKFEELERAPGDPKWL--D 444  

                   kIekDvkRtLvkesaFqsrGKGegiskLrrvLvAYswknPdvgYcQGMNV
                    IekD+ R  +    F  r  G g++ L r+L AY   +Pd gYcQ+   
     fj16913   445 VIEKDLHRQFPFHEMFAAR-GGHGQQDLYRILKAYTIYRPDEGYCQAQAP 493  

                   vaApfLllykSEeqAFyfLdrLlenvvPlKYylpdldGvrlDqkvLdsfv
                   vaA +L+ +   eqAF++L ++++ ++P+ Yy+  l    lD  ++   +
     fj16913   494 VAAVLLMHM-PAEQAFWCLVQICDKYLPG-YYSAGLEAIQLDGEIFFALL 541  

                   eellprLYeYLlskgvdlkvvsLpwfLsLyattlPleeAlrIfDiLFadG
                       p    +L    +d   +   wf  ++a tlP    lr++D++F++G
     fj16913   542 RRASPLAHRHLRRQRIDPVLYMTEWFMCIFARTLPWASVLRVWDMFFCEG 591  

                   ivllfrvaLAvL<-*
                     + frvaL  L   
     fj16913   592 VKIIFRVALVLL    603  

PF00566.9.ls: domain 1 of 1, from 400 to 616: score 138.9, E = 1.3e-38
                   *->vkeGvpsstrakVWavcsgAyqlrYAsageYerllrrgdekesqavd
                       + G pss rak W  +s+   l   ++g +e+l r    +     d
     fj16913   400    CRKGIPSSLRAKAWQYLSNSKELLEQNPGKFEELERAPGDPKWL--D 444  

                   kIekDvkRtLvkesaFqsrGKGegiskLrrvLvAYswknPdvgYcQGMNV
                    IekD+ R  +    F  r  G g++ L r+L AY   +Pd gYcQ+   
     fj16913   445 VIEKDLHRQFPFHEMFAAR-GGHGQQDLYRILKAYTIYRPDEGYCQAQAP 493  

                   vaApfLllykSEeqAFyfLdrLlenvvPlKYylpdldGvrlDqkvLdsfv
                   vaA +L+ +   eqAF++L ++++ ++P+ Yy+  l    lD  ++   +
     fj16913   494 VAAVLLMHM-PAEQAFWCLVQICDKYLPG-YYSAGLEAIQLDGEIFFALL 541  

                   eellprLYeYLlskgvdlkvvsLpwfLsLyattlPleeAlrIfDiLFadG
                       p    +L    +d   +   wf  ++a tlP    lr++D++F++G
     fj16913   542 RRASPLAHRHLRRQRIDPVLYMTEWFMCIFARTLPWASVLRVWDMFFCEG 591  

                   ivllfrvaLAvLkil...keqiLda<-*
                     + frvaL  L    ++ e +  +   
     fj16913   592 VKIIFRVALVLLRHTlgsVEKLRSC    616  

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