hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-10231447/chunk_1/iprscan-20090618-10231447.nocrc
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Query sequence: fj16913
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00164                                                 203.1    2.6e-56   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00164    1/1     400   614 ..     1   310 []   203.1  2.6e-56

Alignments of top-scoring domains:
SM00164: domain 1 of 1, from 400 to 614: score 203.1, E = 2.6e-56
                   *->vrkGvppslRgeVWklLlnaqpmntsnweraqkakdaesqflvvndd
                      +rkG+p+slR+++W++L+n ++   +n                    
     fj16913   400    CRKGIPSSLRAKAWQYLSNSKELLEQN-------------------- 426  

                   rlkdeYsrllnqtapkdkstdleqavssnnkdfeeqPLsiwnffqdndsl
                     ++++++l +     +                                l
     fj16913   427 --PGKFEELERAPGDPKW-------------------------------L 443  

                   dqIekDlkRtfpelsfFqfrsrdnqkevllddengpgqesLrrvLkaYsl
                   d IekDl+R fp +++F  r             +g gq+ L+r+LkaY +
     fj16913   444 DVIEKDLHRQFPFHEMFAAR-------------GGHGQQDLYRILKAYTI 480  

                   ynpehivgYcQGmnflaapLLlvmpiydEedAFwcfvkLmerylpnflfk
                   y+p+   gYcQ  + +aa+LL++m   + e+AFwc+v++++ ylp ++  
     fj16913   481 YRPD--EGYCQAQAPVAAVLLMHM---PAEQAFWCLVQICDKYLPGYY-- 523  

                   dtnnfytpdlsglqadqlvldslleeylPeLykHLqeqdkqskkkhvdkl
                         + +l  +q+d   ++ ll+   P  + HL +q            
     fj16913   524 ------SAGLEAIQLDGEIFFALLRRASPLAHRHLRRQ------------ 555  

                   eidpslyalrWfLtlFarelPledvlRiwDvlfaellrlgseflfkiala
                    idp ly  +Wf++ Far+lP+  vlR+wD++f+e    g +++f++al 
     fj16913   556 RIDPVLYMTEWFMCIFARTLPWASVLRVWDMFFCE----GVKIIFRVALV 601  

                   iLklnedkllkld<-*
                   +L++      kl    
     fj16913   602 LLRHTLGSVEKLR    614  

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