hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-18105525/chunk_1/iprscan-20080810-18105525.nocrc
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Query sequence: fj16937
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00097.15.fs Zinc finger, C3HC4 type (RING finger)           35.2    5.7e-12   2
PF00643.14.ls B-box zinc finger                               48.3    2.3e-11   1
PF00643.14.fs B-box zinc finger                               46.5    3.2e-11   1
PF00097.15.ls Zinc finger, C3HC4 type (RING finger)           26.0    0.00012   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00097.15.fs   1/2      46    75 ..     1    40 [.    32.6  4.7e-11
PF00097.15.ls   1/1      46    82 ..     1    50 []    26.0  0.00012
PF00643.14.fs   1/1     247   288 ..     1    50 []    46.5  3.2e-11
PF00643.14.ls   1/1     247   288 ..     1    50 []    48.3  2.3e-11

Alignments of top-scoring domains:
PF00097.15.fs: domain 1 of 2, from 46 to 75: score 32.6, E = 4.7e-11
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwls<-*
                      C+ICl+++k+p+      + CgH      fCr C+++ +s   
     fj16937    46    CAICLDYFKDPV-----SISCGHN-----FCRGCVTQLWS    75   

PF00097.15.ls: domain 1 of 1, from 46 to 82: score 26.0, E = 0.00012
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlss..sgnt
                      C+ICl+++k+p+      + CgH      fCr C+++ +s ++++ +
     fj16937    46    CAICLDYFKDPV-----SISCGHN-----FCRGCVTQLWSKedEEDQ 82   

                   tCplC<-*
                           
     fj16937     - -----    -    

PF00643.14.fs: domain 1 of 1, from 247 to 288: score 46.5, E = 3.2e-11
                   *->ekervCpeHgdneklslFCedDgqlLCvvCrlsgeHqanklfrgHtv
                        + +C  H+  e l+lFCe D +++CvvCr+s+ H      + H v
     fj16937   247    NDQGMCFKHQ--EALKLFCEVDKEAICVVCRESRSH------KQHSV 285  

                   vpl<-*
                    pl   
     fj16937   286 LPL    288  

PF00643.14.ls: domain 1 of 1, from 247 to 288: score 48.3, E = 2.3e-11
                   *->ekervCpeHgdneklslFCedDgqlLCvvCrlsgeHqanklfrgHtv
                        + +C  H+  e l+lFCe D +++CvvCr+s+ H      + H v
     fj16937   247    NDQGMCFKHQ--EALKLFCEVDKEAICVVCRESRSH------KQHSV 285  

                   vpl<-*
                    pl   
     fj16937   286 LPL    288  

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