hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-18171730/chunk_1/iprscan-20080810-18171730.nocrc
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Query sequence: fj17066
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00385.14.ls 'chromo' (CHRromatin Organisation MOdifier)     74.7    2.7e-19   1
PF00385.14.fs 'chromo' (CHRromatin Organisation MOdifier)     72.9    3.7e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00385.14.fs   1/1      35    84 ..     1    68 []    72.9  3.7e-19
PF00385.14.ls   1/1      35    84 ..     1    68 []    74.7  2.7e-19

Alignments of top-scoring domains:
PF00385.14.fs: domain 1 of 1, from 35 to 84: score 72.9, E = 3.7e-19
                   *->yeVErILdhrlrkggkksvplpekpitgleYLVKWkGypyeenTWEp
                      +  E+ L++r+rkg+              eYLVKWkG++ +++TWEp
     fj17066    35    FAAEALLKRRIRKGRM-------------EYLVKWKGWSQKYSTWEP 68   

                   eenLkackgfpelkieefeqr<-*
                   een+ ++    +l + +fe+r   
     fj17066    69 EENILDA----RL-LAAFEER    84   

PF00385.14.ls: domain 1 of 1, from 35 to 84: score 74.7, E = 2.7e-19
                   *->yeVErILdhrlrkggkksvplpekpitgleYLVKWkGypyeenTWEp
                      +  E+ L++r+rkg+              eYLVKWkG++ +++TWEp
     fj17066    35    FAAEALLKRRIRKGRM-------------EYLVKWKGWSQKYSTWEP 68   

                   eenLkackgfpelkieefeqr<-*
                   een+ ++    +l + +fe+r   
     fj17066    69 EENILDA----RL-LAAFEER    84   

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