hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-18364458/chunk_1/iprscan-20080810-18364458.nocrc
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Query sequence: fj17479
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02005.7.fs N2,N2-dimethylguanosine tRNA methyltransfera   143.8    1.2e-45   2
PF02005.7.ls N2,N2-dimethylguanosine tRNA methyltransfera    57.6      4e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02005.7.ls   1/1     235   684 ..     1   473 []    57.6    4e-15
PF02005.7.fs   1/2     275   483 ..   108   315 ..   109.0  1.1e-34
PF02005.7.fs   2/2     627   684 ..   415   473 .]    34.8    3e-11

Alignments of top-scoring domains:
PF02005.7.ls: domain 1 of 1, from 235 to 684: score 57.6, E = 4e-15
                   *->GearikvpdkevtkeeAkikvskknpVFYNPrMefNRDLsVlvIrAq
                        +   +p+k+ +        ++      NP M++NR L        
     fj17479   235    --PNYSIPQKTDS--------YF------NPKMKLNRQLIFCT---- 261  

                   lnllhkklgekqkkkkqkvkrdaelkeEekkkldesedlekgspkktakv
                   l++l ++  ++                                       
     fj17479   262 LAALAEE-RKP--------------------------------------- 271  

                   senneegikvLDALSASGIRaIRfAKElEvpgveevfANDispkAVelIk
                          ++ LDA+ A+GI ++  A  + + ++ +v  ND++++ V lI+
     fj17479   272 -------LECLDAFGATGIMGLQWA--KHLGNAVKVTINDLNENSVTLIQ 312  

                   eNVlLN.....FdvkLNevedRAIvsgE..i..VvinedDAnalMrkhke
                   eN  LN+ +   d+k +e +d  + +gE+++++++  ++DAn+lM+    
     fj17479   313 ENCHLNklkvvVDSKEKEKSDDILEEGEknLgnIKVTKMDANVLMH---- 358  

                   nhrrFdvIDLDPFGSPaPFlDsAvqSvkrgGlLcVTATDtAvLCGNaypk
                     r Fd+I LDPFG+ + +lDsA + +++ G+ +VT TD ++L    +  
     fj17479   359 -LRSFDFIHLDPFGTSVNYLDSAFRNIRNLGIVSVTSTDISSLYA-KAQH 406  

                   aClrKYgAvpLrgefCHEvGLRiLlgaiareAAKYdkaiePLLSySiDHY
                      r Yg + +r+e++ E + Ri++ a+ar+AA+  k+ie+L++ + +H 
     fj17479   407 VARRHYGCNIVRTEYYKELAARIVVAAVARAAARCNKGIEVLFAVALEHF 456  

                   vRVFvkvkrGaakvdkvieklGyvyhCsgCGSfheqpLGKlsereqevvt
                   v V v+v rG+  +d+++ k+ y+ hC  C   +e    K +    e+++
     fj17479   457 VLVVVRVLRGPTSADETAKKIQYLIHCQWC---EERIFQKDGNMVEENPY 503  

                   GiakfsaAiGPPVsaeC..ehCggrfhlaGPlWlGpLhDkeFveemleea
                      +           +C+++  g +    GPlW   L +  F+++ml e 
     fj17479   504 RQLP----------CNChgSMPGKTAIELGPLWSSSLFNTGFLKRMLFES 543  

                   esek.............................................e
                      ++ ++ ++  ++   +++ +++++ + + +++ +++++++   ++++
     fj17479   544 LH-HglddiqtliktlifesectpqsqfsihassnvnkqeengvfikttD 592  

                   eefGTskri....lglLklike...........ElalDvPlyYdlhqlas
                   +++ T   i +++++  ++i++ +++++++ ++E    +P+yY +h   s
     fj17479   593 DTT-TDNYIaqgkRKSNEMITNlgkkqktdvstE---HPPFYYNIHR-HS 637  

                   vlklsvPPlqdvvsaLkeaGFevSrTHanptgIKTnApwevvwevlr<-*
                   + + + P+l+++   L  aGF+vSrTH+ p g++T+Ap+  +  +l    
     fj17479   638 IKGMNMPKLKKFLCYLSQAGFRVSRTHFDPMGVRTDAPLMQFKSILL    684  

PF02005.7.fs: domain 1 of 2, from 275 to 483: score 109.0, E = 1.1e-34
                   *->LDALSASGIRaIRfAKElEvpgveevfANDispkAVelIkeNVlLN.
                      LDA+ A+GI ++  A  + + ++ +v  ND++++ V lI+eN  LN+
     fj17479   275    LDAFGATGIMGLQWA--KHLGNAVKVTINDLNENSVTLIQENCHLNk 319  

                   ....FdvkLNevedRAIvsgE..i..VvinedDAnalMrkhkenhrrFdv
                    +   d+k +e +d  + +gE+++++++  ++DAn+lM+      r Fd+
     fj17479   320 lkvvVDSKEKEKSDDILEEGEknLgnIKVTKMDANVLMH-----LRSFDF 364  

                   IDLDPFGSPaPFlDsAvqSvkrgGlLcVTATDtAvLCGNaypkaClrKYg
                   I LDPFG+ + +lDsA + +++ G+ +VT TD ++L    +     r Yg
     fj17479   365 IHLDPFGTSVNYLDSAFRNIRNLGIVSVTSTDISSLYA-KAQHVARRHYG 413  

                   AvpLrgefCHEvGLRiLlgaiareAAKYdkaiePLLSySiDHYvRVFvkv
                    + +r+e++ E + Ri++ a+ar+AA+  k+ie+L++ + +H v V v+v
     fj17479   414 CNIVRTEYYKELAARIVVAAVARAAARCNKGIEVLFAVALEHFVLVVVRV 463  

                   krGaakvdkvieklGyvyhC<-*
                    rG+  +d+++ k+ y+ hC   
     fj17479   464 LRGPTSADETAKKIQYLIHC    483  

PF02005.7.fs: domain 2 of 2, from 627 to 684: score 34.8, E = 3e-11
                   *->vPlyYdlhqlasvlklsvPPlqdvvsaLkeaGFevSrTHanptgIKT
                      +P+yY +h   s+ + + P+l+++   L  aGF+vSrTH+ p g++T
     fj17479   627    PPFYYNIHR-HSIKGMNMPKLKKFLCYLSQAGFRVSRTHFDPMGVRT 672  

                   nApwevvwevlr<-*
                   +Ap+  +  +l    
     fj17479   673 DAPLMQFKSILL    684  

//