hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-18364458/chunk_1/iprscan-20080810-18364458.nocrc
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Query sequence: fj17479
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                  32.8    4.8e-05   2

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/2     114   140 ..     1    23 []    12.2       13
SM00355      2/2     179   201 ..     1    23 []    20.6     0.22

Alignments of top-scoring domains:
SM00355: domain 1 of 2, from 114 to 140: score 12.2, E = 13
                   *->ykCpigCg...ksfssk.aLkrHmr.vH<-*
                        Cp+ C++++++ ++ + L+rH+++ H   
     fj17479   114    QACPL-CPkekFRACNShKLRRHLQnLH    140  

SM00355: domain 2 of 2, from 179 to 201: score 20.6, E = 0.22
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C i C+ + ++++++  H+r+H   
     fj17479   179    YHCII-CSATITRRtDMLGHVRRH    201  

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