hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-10295113/chunk_1/iprscan-20090618-10295113.nocrc
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Query sequence: fj17491
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                         105.1    1.9e-28   4
PF00651.21.ls BTB/POZ domain                                 102.8    9.3e-28   1
PF00651.21.fs BTB/POZ domain                                 101.1    1.1e-27   1
PF00096.16.fs Zinc finger, C2H2 type                          97.2    4.4e-26   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00651.21.fs   1/1      30   134 ..     1   135 []   101.1  1.1e-27
PF00651.21.ls   1/1      30   134 ..     1   135 []   102.8  9.3e-28
PF00096.16.ls   1/4     308   330 ..     1    24 []    20.3   0.0063
PF00096.16.fs   2/4     333   355 ..     1    24 []    30.6  2.3e-06
PF00096.16.ls   2/4     333   355 ..     1    24 []    32.5  1.3e-06
PF00096.16.fs   3/4     361   383 ..     1    24 []    27.5  1.3e-05
PF00096.16.ls   3/4     361   383 ..     1    24 []    29.5  1.1e-05
PF00096.16.ls   4/4     389   412 ..     1    24 []    22.8   0.0012

Alignments of top-scoring domains:
PF00651.21.fs: domain 1 of 1, from 30 to 134: score 101.1, E = 1.1e-27
                   *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      +n lr+q  +cDV +++ d         +f  HK++LaacS++ ++ 
     fj17491    30    MNLLRQQNLFCDVSIYIND--------TEFQGHKVILAACSTFMRDQ 68   

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                   F+ +       + ++v+  i+    s+e+ + lL  +Ytg l+++     
     fj17491    69 FLLT-------QSKHVR--IT-ILQSAEVGRKLLLSCYTGALEVK----- 103  

                   PssckseenvedlLaaAadllqipslvdaCeefliksl<-*
                         ++ + ++L aA ++lq+ ++v++C+e l k l   
     fj17491   104 ------RKELLKYLTAA-SYLQMVHIVEKCTEALSKYL    134  

PF00651.21.ls: domain 1 of 1, from 30 to 134: score 102.8, E = 9.3e-28
                   *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      +n lr+q  +cDV +++ d         +f  HK++LaacS++ ++ 
     fj17491    30    MNLLRQQNLFCDVSIYIND--------TEFQGHKVILAACSTFMRDQ 68   

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                   F+ +       + ++v+  i+    s+e+ + lL  +Ytg l+++     
     fj17491    69 FLLT-------QSKHVR--IT-ILQSAEVGRKLLLSCYTGALEVK----- 103  

                   PssckseenvedlLaaAadllqipslvdaCeefliksl<-*
                         ++ + ++L aA ++lq+ ++v++C+e l k l   
     fj17491   104 ------RKELLKYLTAA-SYLQMVHIVEKCTEALSKYL    134  

PF00096.16.ls: domain 1 of 4, from 308 to 330: score 20.3, E = 0.0063
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++Cp  C + F + +n+ rHl++H   
     fj17491   308    HQCP-RCPRGFLHVENYLRHLKMH    330  

PF00096.16.fs: domain 2 of 4, from 333 to 355: score 30.6, E = 2.3e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C  +Cgk+F++k+nL+rH+r H   
     fj17491   333    FLCL-QCGKTFTQKKNLNRHIRGH    355  

PF00096.16.ls: domain 2 of 4, from 333 to 355: score 32.5, E = 1.3e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C  +Cgk+F++k+nL+rH+r H   
     fj17491   333    FLCL-QCGKTFTQKKNLNRHIRGH    355  

PF00096.16.fs: domain 3 of 4, from 361 to 383: score 27.5, E = 1.3e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +C k+F+ ks+L+ Hl++H   
     fj17491   361    FQCT-VCLKTFTAKSTLQDHLNIH    383  

PF00096.16.ls: domain 3 of 4, from 361 to 383: score 29.5, E = 1.1e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +C k+F+ ks+L+ Hl++H   
     fj17491   361    FQCT-VCLKTFTAKSTLQDHLNIH    383  

PF00096.16.ls: domain 4 of 4, from 389 to 412: score 22.8, E = 0.0012
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      ykC+  C+  F++ks Lk+Hl + H   
     fj17491   389    YKCH-CCDMDFKHKSALKKHLTSvH    412  

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