hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-10295113/chunk_1/iprscan-20090618-10295113.nocrc
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Query sequence: fj17491
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                  97.5    1.5e-24   4
SM00225                                                  77.0    2.3e-18   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00225      1/1      40   134 ..     1   114 []    77.0  2.3e-18
SM00355      1/4     308   330 ..     1    23 []    22.0    0.084
SM00355      2/4     333   355 ..     1    23 []    27.5   0.0018
SM00355      3/4     361   383 ..     1    23 []    26.3   0.0042
SM00355      4/4     389   412 ..     1    23 []    21.7      0.1

Alignments of top-scoring domains:
SM00225: domain 1 of 1, from 40 to 134: score 77.0, E = 2.3e-18
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cDv + + +         ++f+   Hk++Laac   S++ ++ f+ +
     fj17491    40    CDVSIYIND---------TEFQG--HKVILAAC---STFMRDQFLLt 72   

                   ......ieldDeallievspeaFralLnflYt.kldlpeedvenveelLe
                   ++++ +i++         s+e+ r lL  +Yt+ l+++++   +++++L 
     fj17491    73 qskhvrITILQ-------SAEVGRKLLLSCYTgALEVKRK---ELLKYLT 112  

                   lAdfldSYGqip.lvelCeefllknl<-*
                   +A++l    q+ ++ve+C+e+l k+l   
     fj17491   113 AASYL----QMVhIVEKCTEALSKYL    134  

SM00355: domain 1 of 4, from 308 to 330: score 22.0, E = 0.084
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++Cp  C++ f + +++ rH+++H   
     fj17491   308    HQCPR-CPRGFLHVeNYLRHLKMH    330  

SM00355: domain 2 of 4, from 333 to 355: score 27.5, E = 0.0018
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C + Cgk+f++k++L+rH+r H   
     fj17491   333    FLCLQ-CGKTFTQKkNLNRHIRGH    355  

SM00355: domain 3 of 4, from 361 to 383: score 26.3, E = 0.0042
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ C k+f+ k+ L+ H+ +H   
     fj17491   361    FQCTV-CLKTFTAKsTLQDHLNIH    383  

SM00355: domain 4 of 4, from 389 to 412: score 21.7, E = 0.1
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ykC+  C++ f++k+aLk+H+ +vH   
     fj17491   389    YKCHC-CDMDFKHKsALKKHLTsVH    412  

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