hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-18494666/chunk_1/iprscan-20080810-18494666.nocrc
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Query sequence: fj17573
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF00156.17.fs Phosphoribosyl transferase domain           29.5      3e-08   1
PF00156.17.ls Phosphoribosyl transferase domain            8.3      0.001   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF00156.17.ls   1/1       3   139 ..     1   164 []     8.3    0.001
PF00156.17.fs   1/1      81   118 ..   106   143 ..    29.5    3e-08

Alignments of top-scoring domains:
PF00156.17.ls: domain 1 of 1, from 3 to 139: score 8.3, E = 0.001
                   *->ditsvlsnpealrliadelaekikesyakaiilefdvvvGpdagGip
                       i +++ n          ++   ++        e+ ++++++   ++
     fj17573     3    IILKFYLN----------IVAATQP-------RENICLFCILL--LI 30   

                   fAaalAdaLgrgvglpla.firvRk........egklpgevglieg.gsv
                   + + l ++     glp+++++++ +  +++  ++++  ++ g+ ++ g++
     fj17573    31 ILSFLLYQC----GLPYVeVLCKNRyvgrtfiqPNMRLRQLGVAKKfGVL 76   

                   kYeleygkalEihdaikpkGkrVliVDDvidTGgTilaaaelLkeaGakv
                   +     +k           Gkr+++VDD i  G Ti  +++lLke Gak 
     fj17573    77 S---DNFK-----------GKRIVLVDDSIVRGNTISPIIKLLKESGAKE 112  

                   vgvavlldrlegpavkrl.pdylggeev<-*
                   v++ v+ +    p+ + ++  + ++e++   
     fj17573   113 VHIRVASPPIKYPCFMGInI-PTKEELI    139  

PF00156.17.fs: domain 1 of 1, from 81 to 118: score 29.5, E = 3e-08
                   *->kGkrVliVDDvidTGgTilaaaelLkeaGakvvgvavl<-*
                      kGkr+++VDD i  G Ti  +++lLke Gak v++ v+   
     fj17573    81    KGKRIVLVDDSIVRGNTISPIIKLLKESGAKEVHIRVA    118  

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