hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-18562758/chunk_1/iprscan-20080810-18562758.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj17878y3 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00225.13.ls Kinesin motor domain 568.6 5.7e-168 1 PF00225.13.fs Kinesin motor domain 566.9 1.9e-167 1 PF00400.22.ls WD domain, G-beta repeat 186.4 6.5e-53 7 PF00400.22.fs WD domain, G-beta repeat 172.8 7.9e-49 7 PF02996.8.fs Prefoldin subunit 26.7 5.3e-07 5 PF06696.2.ls Streptococcal surface antigen repeat 30.2 6.5e-06 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00225.13.fs 1/1 81 438 .. 1 424 [] 566.9 1.9e-167 PF00225.13.ls 1/1 81 438 .. 1 424 [] 568.6 5.7e-168 PF00400.22.ls 1/7 1390 1426 .. 1 38 [] 38.8 1.7e-08 PF00400.22.fs 1/7 1390 1426 .. 1 38 [] 36.9 2e-09 PF00400.22.fs 2/7 1430 1467 .. 1 38 [] 19.5 0.00016 PF00400.22.fs 3/7 1494 1531 .. 1 38 [] 14.1 0.0054 PF00400.22.ls 4/7 1535 1576 .. 1 38 [] 30.1 7e-06 PF00400.22.fs 4/7 1535 1576 .. 1 38 [] 28.1 5.8e-07 PF00400.22.fs 5/7 1585 1622 .. 1 38 [] 13.6 0.0073 PF00400.22.fs 6/7 1627 1665 .. 1 38 [] 26.5 1.7e-06 PF00400.22.ls 6/7 1627 1665 .. 1 38 [] 28.5 2.3e-05 PF00400.22.ls 7/7 1669 1705 .. 1 38 [] 36.0 1.2e-07 PF00400.22.fs 7/7 1669 1705 .. 1 38 [] 34.1 1.2e-08 Alignments of top-scoring domains: PF00225.13.fs: domain 1 of 1, from 81 to 438: score 566.9, E = 1.9e-167 *->RvRPlnerEksrgssdvvnvsedvessvitn.gkektFtFDkVFdpe R+RP +++Ek +g++++ +++ + ++ gk+k FtFD+VFd + fj17878y3 81 RIRPQLAKEKIEGCHICT---SVTPGEPQVFlGKDKAFTFDYVFDID 124 atQelsepYAsqefvyestakplvesvleGyNvtIFAYGQTGSGKTYTMe + qe++y+++++ l+e ++eGyN+t+FAYGQTG+GKTYTM+ fj17878y3 125 SQ---------QEQIYIQCIEKLIEGCFEGYNATVFAYGQTGAGKTYTMG 165 Gstdsdks.spnpsdsCttpeeepGiiPRaledlFerieerkerkpvfKP ++n eee Gii Ra+++lF++iee k+ ++++ fj17878y3 166 T------GfDVNI------VEEELGIISRAVKHLFKSIEEKKHIAIKN-- 201 klnekgwellncqetligvsfdtrglsSdlyv.edlefsvkvSylEIYNE +++++ +f+v +++lE+YNE fj17878y3 202 ------------------------------GLpAP-DFKVNAQFLELYNE 220 kirDLLspsppqrgspskdnekkkkkpLrireDpkrGgkmdgvyVkGLte ++ DL ++++ +++k+kk+++ri+eD+ +G +y +G+t fj17878y3 221 EVLDLFDTTRD-------IDAKSKKSNIRIHEDSTGG-----IYTVGVTT 258 veVtsaeevlelLelGnknRtvasTkmNeeSSRSHaiFtitveqrntdtt +V++++e++++L+lG+ +Rt+asT+mN +SSRSHaiFti+v q++ +++ fj17878y3 259 RTVNTESEMMQCLKLGALSRTTASTQMNVQSSRSHAIFTIHVCQTRVCPQ 308 gsvvtgkd........nsgeesvrvskLnLVDLAGSERaskTgatgAggr ++ + +d++ +++ +++e ++++k+++VDLAGSER+++Tg A+g+ fj17878y3 309 IDADNATDnkiisesaQMNEFETLTAKFHFVDLAGSERLKRTG---ATGE 355 RLkEaanINkSLsaLGnVInALadnq.kssHiPYRDSKLTrLLQDSLGGG R kE+ +IN L+aLGnVI+AL+d++++++H+PYRDSKLTrLLQDSLGG fj17878y3 356 RAKEGISINCGLLALGNVISALGDKSkRATHVPYRDSKLTRLLQDSLGG- 404 DNsKTlMIaniSPsssrNntnyeETLsTLrFAsRAKnIk<-* Ns+T+MIa++SPs+ +++ETL+TL++A+RA+nIk fj17878y3 405 -NSQTIMIACVSPSDR----DFMETLNTLKYANRARNIK 438 PF00225.13.ls: domain 1 of 1, from 81 to 438: score 568.6, E = 5.7e-168 *->RvRPlnerEksrgssdvvnvsedvessvitn.gkektFtFDkVFdpe R+RP +++Ek +g++++ +++ + ++ gk+k FtFD+VFd + fj17878y3 81 RIRPQLAKEKIEGCHICT---SVTPGEPQVFlGKDKAFTFDYVFDID 124 atQelsepYAsqefvyestakplvesvleGyNvtIFAYGQTGSGKTYTMe + qe++y+++++ l+e ++eGyN+t+FAYGQTG+GKTYTM+ fj17878y3 125 SQ---------QEQIYIQCIEKLIEGCFEGYNATVFAYGQTGAGKTYTMG 165 Gstdsdks.spnpsdsCttpeeepGiiPRaledlFerieerkerkpvfKP ++n eee Gii Ra+++lF++iee k+ ++++ fj17878y3 166 T------GfDVNI------VEEELGIISRAVKHLFKSIEEKKHIAIKN-- 201 klnekgwellncqetligvsfdtrglsSdlyv.edlefsvkvSylEIYNE +++++ +f+v +++lE+YNE fj17878y3 202 ------------------------------GLpAP-DFKVNAQFLELYNE 220 kirDLLspsppqrgspskdnekkkkkpLrireDpkrGgkmdgvyVkGLte ++ DL ++++ +++k+kk+++ri+eD+ +G +y +G+t fj17878y3 221 EVLDLFDTTRD-------IDAKSKKSNIRIHEDSTGG-----IYTVGVTT 258 veVtsaeevlelLelGnknRtvasTkmNeeSSRSHaiFtitveqrntdtt +V++++e++++L+lG+ +Rt+asT+mN +SSRSHaiFti+v q++ +++ fj17878y3 259 RTVNTESEMMQCLKLGALSRTTASTQMNVQSSRSHAIFTIHVCQTRVCPQ 308 gsvvtgkd........nsgeesvrvskLnLVDLAGSERaskTgatgAggr ++ + +d++ +++ +++e ++++k+++VDLAGSER+++Tg A+g+ fj17878y3 309 IDADNATDnkiisesaQMNEFETLTAKFHFVDLAGSERLKRTG---ATGE 355 RLkEaanINkSLsaLGnVInALadnq.kssHiPYRDSKLTrLLQDSLGGG R kE+ +IN L+aLGnVI+AL+d++++++H+PYRDSKLTrLLQDSLGG fj17878y3 356 RAKEGISINCGLLALGNVISALGDKSkRATHVPYRDSKLTRLLQDSLGG- 404 DNsKTlMIaniSPsssrNntnyeETLsTLrFAsRAKnIk<-* Ns+T+MIa++SPs+ +++ETL+TL++A+RA+nIk fj17878y3 405 -NSQTIMIACVSPSDR----DFMETLNTLKYANRARNIK 438 PF00400.22.ls: domain 1 of 7, from 1390 to 1426: score 38.8, E = 1.7e-08 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +c+++ +gHt++V cv+ d ll++gS D+t+k+W+ fj17878y3 1390 LQCIhIAeGHTKAVLCVDSTDD---LLFTGSKDRTCKVWN 1426 PF00400.22.fs: domain 1 of 7, from 1390 to 1426: score 36.9, E = 2e-09 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +c+++ +gHt++V cv+ d ll++gS D+t+k+W+ fj17878y3 1390 LQCIhIAeGHTKAVLCVDSTDD---LLFTGSKDRTCKVWN 1426 PF00400.22.fs: domain 2 of 7, from 1430 to 1467: score 19.5, E = 0.00016 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g+ + +l+gH + V +v+++ +l+++ S ik+Wd fj17878y3 1430 GQEImSLgGHPNNVVSVKYCNY-TSLVFTVST-SYIKVWD 1467 PF00400.22.fs: domain 3 of 7, from 1494 to 1531: score 14.1, E = 0.0054 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + ++ ++ ++ +a +p g++l +S + +++Wd fj17878y3 1494 TSRTvAIpSGENQINQIALNPT-GTFLYAASG-NAVRMWD 1531 PF00400.22.ls: domain 4 of 7, from 1535 to 1576: score 30.1, E = 7e-06 *->geck.vl.gHtstVtcvafspd..sgpllasgSrDgtikiWd<-* + ++ l+gH ++V+c+ +++ ++++ l+++gS D+ ik++d fj17878y3 1535 FQSTgKLtGHLGPVMCLTVDQIssGQDLIITGSKDHYIKMFD 1576 PF00400.22.fs: domain 4 of 7, from 1535 to 1576: score 28.1, E = 5.8e-07 *->geck.vl.gHtstVtcvafspd..sgpllasgSrDgtikiWd<-* + ++ l+gH ++V+c+ +++ ++++ l+++gS D+ ik++d fj17878y3 1535 FQSTgKLtGHLGPVMCLTVDQIssGQDLIITGSKDHYIKMFD 1576 PF00400.22.fs: domain 5 of 7, from 1585 to 1622: score 13.6, E = 0.0073 *->geck.vl..gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +++ +++ H ++++++ + d l+sgSrD+ ik Wd fj17878y3 1585 VSPThNFepPHYDGIEALTIQGD---NLFSGSRDNGIKKWD 1622 PF00400.22.fs: domain 6 of 7, from 1627 to 1665: score 26.5, E = 1.7e-06 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +++v ++H+++V+++ ++pd p+l+sg+r g +k+W+ fj17878y3 1627 DLLQqVPnAHKDWVCALGVVPD-HPVLLSGCRGGILKVWN 1665 PF00400.22.ls: domain 6 of 7, from 1627 to 1665: score 28.5, E = 2.3e-05 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +++v ++H+++V+++ ++pd p+l+sg+r g +k+W+ fj17878y3 1627 DLLQqVPnAHKDWVCALGVVPD-HPVLLSGCRGGILKVWN 1665 PF00400.22.ls: domain 7 of 7, from 1669 to 1705: score 36.0, E = 1.2e-07 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ++++ +gH s++++++++ +++++ +D+t++iW+ fj17878y3 1669 FMPVgEMkGHDSPINAICVNST---HIFTAADDRTVRIWK 1705 PF00400.22.fs: domain 7 of 7, from 1669 to 1705: score 34.1, E = 1.2e-08 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ++++ +gH s++++++++ +++++ +D+t++iW+ fj17878y3 1669 FMPVgEMkGHDSPINAICVNST---HIFTAADDRTVRIWK 1705 //