hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-18562758/chunk_1/iprscan-20080810-18562758.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj17878y3 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00129 552.5 1.7e-161 1 SM00320 194.1 1.3e-53 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00129 1/1 73 445 .. 1 404 [] 552.5 1.7e-161 SM00320 1/7 1389 1426 .. 1 46 [] 40.4 2.4e-07 SM00320 2/7 1429 1467 .. 1 46 [] 25.2 0.0092 SM00320 3/7 1493 1531 .. 1 46 [] 18.3 0.62 SM00320 4/7 1534 1576 .. 1 46 [] 27.3 0.0021 SM00320 5/7 1584 1622 .. 1 46 [] 17.8 0.74 SM00320 6/7 1625 1665 .. 1 46 [] 28.6 0.00089 SM00320 7/7 1668 1705 .. 1 46 [] 36.5 3.6e-06 Alignments of top-scoring domains: SM00129: domain 1 of 1, from 73 to 445: score 552.5, E = 1.7e-161 *->kgnIrVavRvdrdRPlnkrEksekakeespsvvtv.....tvtvn.. ++++rVavR+ RP++ +Ek e+ ++ + +v++++++v + ++ fj17878y3 73 ESSVRVAVRI---RPQLAKEKIEG----CHICTSVtpgepQVFLGkd 112 ..FtFDkVFWrydvddpsasQedVFeevaaPLvdsaldGYNvaTIFAYGQ + FtFD+VF d ++ Qe+++ ++ L++ +++GYN+ T+FAYGQ fj17878y3 113 kaFTFDYVF------DIDSQQEQIYIQCIEKLIEGCFEGYNA-TVFAYGQ 155 TGSGKTyTMsGtptdpgilsndla.ditpdepGiIPRaledlFekide.. TG+GKTyTM+ + +i ++e+GiI Ra+++lF++i+e++ fj17878y3 156 TGAGKTYTMGTGF----------DvNIVEEELGIISRAVKHLFKSIEEkk 195 ............fsVkvSylEIYNEkirDLLspspenSksrGkha.kqss + +++ + ++f+V +++lE+YNE++ DL +++++ + s+ fj17878y3 196 hiaiknglpapdFKVNAQFLELYNEEVLDLFDTTRD--------IdAKSK 237 kkkLrirEdkngnrhdapkLtrlrgqggvyVvGLtevsVsSaeevlelle k + ri+Ed++ gg+y vG+t+++V++ e++++l+ fj17878y3 238 KSNIRIHEDST---------------GGIYTVGVTTRTVNTESEMMQCLK 272 rGnknRtvaaTkmNeeSSRSHaiFtitleqkeklepiadek.......te +G+ +Rt+a+T mN +SSRSHaiFti++ q+++ +i++++ ++++ +e fj17878y3 273 LGALSRTTASTQMNVQSSRSHAIFTIHVCQTRVCPQIDADNatdnkiiSE 322 sstnegteqiksskLnLVDLAGSERaskTgseaeGdRLkEaqnINkSLla s + ++ e ++++k+++VDLAGSER ++Tg a+G+R+kE+++IN +Lla fj17878y3 323 SAQMNEFE-TLTAKFHFVDLAGSERLKRTG--ATGERAKEGISINCGLLA 369 LGnVInALaddshdsaeseatkqaggkssHIPYRDSKLTrLLQdSLGGNs LGnVI+AL+d ++++ +H+PYRDSKLTrLLQdSLGGNs fj17878y3 370 LGNVISALGD-------------KSKRATHVPYRDSKLTRLLQDSLGGNS 406 KTlMIanvSPsssnyeETlsTLrFAsRaksIknkpavne<-* T+MIa+vSPs+ ++ ETl+TL++A+Ra++Iknk+ vn+ fj17878y3 407 QTIMIACVSPSDRDFMETLNTLKYANRARNIKNKVMVNQ 445 SM00320: domain 1 of 7, from 1389 to 1426: score 40.4, E = 2.4e-07 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + +++++ +gHt+ +V++v+ +d ll++gs+D+t+++W fj17878y3 1389 PlQCIHIAEGHTK--AVLCVDSTDD--------LLFTGSkDRTCKVW 1425 d<-* + fj17878y3 1426 N 1426 SM00320: domain 2 of 7, from 1429 to 1467: score 25.2, E = 0.0092 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW t++ +++l gH + V sv+++ +l+++ s+ i++W fj17878y3 1429 TgQEIMSLGGHPN--NVVSVKYCNYT------SLVFTVStSY-IKVW 1466 d<-* d fj17878y3 1467 D 1467 SM00320: domain 3 of 7, from 1493 to 1531: score 18.3, E = 0.62 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW +++ + ++ ++ ++ +a +p+g ++l+++s++ +r+W fj17878y3 1493 StSRTVAIPSGEN--QINQIALNPTG------TFLYAASgNA-VRMW 1530 d<-* d fj17878y3 1531 D 1531 SM00320: domain 4 of 7, from 1534 to 1576: score 27.3, E = 0.0021 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + + +l+gH g pV ++++++ + ++ +l+++gs+D+ i+++ fj17878y3 1534 RfQSTGKLTGHLG--PVMCLTVDQIS---SGQDLIITGSkDHYIKMF 1575 d<-* d fj17878y3 1576 D 1576 SM00320: domain 5 of 7, from 1584 to 1622: score 17.8, E = 0.74 *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl t ++++ +++ H + ++ ++++ d l+sgs+D+ i+ fj17878y3 1584 TvSPTHNFEpPHYD--GIEALTIQGD--------NLFSGSrDNGIKK 1620 Wd<-* Wd fj17878y3 1621 WD 1622 SM00320: domain 6 of 7, from 1625 to 1665: score 28.6, E = 0.00089 *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl ++ ll+ +++H++ +V+++ + pd+ +l+sg++ g +++ fj17878y3 1625 QkDLLQQVPnAHKD--WVCALGVVPDH------PVLLSGCrGGILKV 1663 Wd<-* W+ fj17878y3 1664 WN 1665 SM00320: domain 7 of 7, from 1668 to 1705: score 36.5, E = 3.6e-06 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW t ++ ++kgH++ p+++++++++ +++++ +D+t+r+W fj17878y3 1668 TfMPVGEMKGHDS--PINAICVNST--------HIFTAAdDRTVRIW 1704 d<-* + fj17878y3 1705 K 1705 //