# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofj18224.fasta.nr -Q fj18224.ptfa /cdna2/lib/nr/nr 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 fj18224, 153 aa
 vs /cdna2/lib/nr/nr library

2362217958 residues in 6843189 sequences
 statistics sampled from 60000 to 6842299 sequences
  Expectation_n fit: rho(ln(x))= 5.0239+/-0.000186; mu= 8.2984+/- 0.010
 mean_var=74.5852+/-14.424, 0's: 45 Z-trim: 46  B-trim: 31 in 1/64
 Lambda= 0.148507

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(6843189)
gi|62088074|dbj|BAD92484.1| hypothetical protein M ( 153) 1084 240.4 6.9e-62
gi|109114615|ref|XP_001111327.1| PREDICTED: simila ( 346)  264 65.0 9.7e-09


>>gi|62088074|dbj|BAD92484.1| hypothetical protein MGC41  (153 aa)
 initn: 1084 init1: 1084 opt: 1084  Z-score: 1266.3  bits: 240.4 E(): 6.9e-62
Smith-Waterman score: 1084;  100.000% identity (100.000% similar) in 153 aa overlap (1-153:1-153)

               10        20        30        40        50        60
fj1822 MKAEGSSAFRLHSSSLCGSSWRVGVDVWMPQRSSVVGGNLSPFCPCLNPFPWCSQCLKPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|620 MKAEGSSAFRLHSSSLCGSSWRVGVDVWMPQRSSVVGGNLSPFCPCLNPFPWCSQCLKPE
               10        20        30        40        50        60

               70        80        90       100       110       120
fj1822 DVAEAVIYVLSTPAHIQVSLALTVYSLEEPNQPQRRGAGSPAGPGESVTAASCLVPSTDW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|620 DVAEAVIYVLSTPAHIQVSLALTVYSLEEPNQPQRRGAGSPAGPGESVTAASCLVPSTDW
               70        80        90       100       110       120

              130       140       150   
fj1822 RHPDEAHGAGDLVTVGAPPSLPTLHGLPPASGF
       :::::::::::::::::::::::::::::::::
gi|620 RHPDEAHGAGDLVTVGAPPSLPTLHGLPPASGF
              130       140       150   

>>gi|109114615|ref|XP_001111327.1| PREDICTED: similar to  (346 aa)
 initn: 260 init1: 260 opt: 264  Z-score: 312.1  bits: 65.0 E(): 9.7e-09
Smith-Waterman score: 264;  58.333% identity (72.222% similar) in 72 aa overlap (83-153:276-346)

             60        70        80        90       100       110  
fj1822 CSQCLKPEDVAEAVIYVLSTPAHIQVSLALTVYSLEEPNQPQRRGAGSPAGPGESVTAAS
                                     .. :: .:  :   ....  : :..     
gi|109 PPFQLLWLLLEGWGGHVDAAEELSGGREFESILSLSQPV-PLVLSVSQTRGCGRGCYLRP
         250       260       270       280        290       300    

             120       130       140       150   
fj1822 CLVPS-TDWRHPDEAHGAGDLVTVGAPPSLPTLHGLPPASGF
          :.  :::::::::::::::::::::::::::::::::::
gi|109 QHPPTHPDWRHPDEAHGAGDLVTVGAPPSLPTLHGLPPASGF
          310       320       330       340      




153 residues in 1 query   sequences
2362217958 residues in 6843189 library sequences
 Tcomplib [34.26] (8 proc)
 start: Sun Aug 10 19:00:27 2008 done: Sun Aug 10 19:03:28 2008
 Total Scan time: 578.420 Total Display time:  0.000

Function used was FASTA [version 34.26.5 April 26, 2007]