# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofj18232.fasta.nr -Q fj18232.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fj18232, 222 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6818561 sequences Expectation_n fit: rho(ln(x))= 5.0465+/-0.000197; mu= 9.5307+/- 0.011 mean_var=106.7658+/-20.143, 0's: 41 Z-trim: 198 B-trim: 0 in 0/68 Lambda= 0.124125 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62087148|dbj|BAD92021.1| zinc finger protein 76 ( 222) 1657 306.6 1.8e-81 gi|119624219|gb|EAX03814.1| zinc finger protein 76 ( 587) 763 147.0 5e-33 gi|194379816|dbj|BAG58260.1| unnamed protein produ ( 401) 761 146.4 5.1e-33 gi|194378084|dbj|BAG57792.1| unnamed protein produ ( 428) 760 146.3 6e-33 gi|119624221|gb|EAX03816.1| zinc finger protein 76 ( 515) 760 146.4 6.7e-33 gi|1293898|gb|AAA98739.1| zinc-finger protein ( 515) 760 146.4 6.7e-33 gi|56208577|emb|CAI20189.1| zinc finger protein 76 ( 544) 760 146.4 7e-33 gi|20455531|sp|P36508|ZNF76_HUMAN Zinc finger prot ( 570) 760 146.4 7.2e-33 gi|114607046|ref|XP_001172128.1| PREDICTED: zinc f ( 421) 754 145.2 1.2e-32 gi|114607044|ref|XP_001172105.1| PREDICTED: zinc f ( 499) 754 145.3 1.4e-32 gi|109070860|ref|XP_001116611.1| PREDICTED: zinc f ( 514) 754 145.3 1.4e-32 gi|73972638|ref|XP_863846.1| PREDICTED: similar to ( 515) 754 145.3 1.4e-32 gi|114607042|ref|XP_001172141.1| PREDICTED: zinc f ( 515) 754 145.3 1.4e-32 gi|194040363|ref|XP_001927053.1| PREDICTED: simila ( 554) 754 145.3 1.5e-32 gi|26389980|dbj|BAC25822.1| unnamed protein produc ( 568) 754 145.4 1.5e-32 gi|114607040|ref|XP_001172151.1| PREDICTED: zinc f ( 568) 754 145.4 1.5e-32 gi|62665717|ref|XP_342103.2| PREDICTED: similar to ( 568) 754 145.4 1.5e-32 gi|109070858|ref|XP_001116625.1| PREDICTED: zinc f ( 569) 754 145.4 1.5e-32 gi|73972636|ref|XP_538875.2| PREDICTED: similar to ( 570) 754 145.4 1.5e-32 gi|114607038|ref|XP_001172167.1| PREDICTED: zinc f ( 570) 754 145.4 1.5e-32 gi|38148667|gb|AAH60611.1| Zfp523 protein [Mus mus ( 316) 748 144.0 2.2e-32 gi|76650072|ref|XP_885373.1| PREDICTED: similar to ( 570) 750 144.6 2.5e-32 gi|149043461|gb|EDL96912.1| rCG60573 [Rattus norve (1161) 745 144.1 7.2e-32 gi|148690614|gb|EDL22561.1| mCG126425 [Mus musculu (1482) 745 144.3 8.4e-32 gi|116284208|gb|AAI24409.1| Zgc:153635 [Danio reri ( 516) 688 133.5 5.1e-29 gi|118091232|ref|XP_426401.2| PREDICTED: similar t ( 650) 678 131.8 2e-28 gi|47507273|gb|AAH71051.1| Staf protein [Xenopus l ( 507) 676 131.3 2.2e-28 gi|49118117|gb|AAH73068.1| MGC82721 protein [Xenop ( 519) 676 131.3 2.3e-28 gi|62027600|gb|AAH92134.1| Zinc finger protein 143 ( 555) 676 131.4 2.4e-28 gi|940879|emb|CAA59354.1| selenocysteine tRNA acti ( 600) 676 131.4 2.5e-28 gi|194213829|ref|XP_001504963.2| PREDICTED: simila ( 638) 675 131.3 2.9e-28 gi|67968009|dbj|BAE00486.1| unnamed protein produc ( 435) 672 130.5 3.4e-28 gi|11544640|emb|CAC17610.1| ZNF143 protein [Homo s ( 531) 672 130.6 3.8e-28 gi|3243079|gb|AAC96102.1| SPH-binding factor [Homo ( 551) 672 130.7 3.9e-28 gi|194386266|dbj|BAG59697.1| unnamed protein produ ( 606) 672 130.7 4.1e-28 gi|109107337|ref|XP_001101763.1| PREDICTED: zinc f ( 617) 672 130.7 4.2e-28 gi|18044946|gb|AAH20219.1| ZNF143 protein [Homo sa ( 626) 672 130.7 4.2e-28 gi|1731418|sp|P52747|ZN143_HUMAN Zinc finger prote ( 626) 672 130.7 4.2e-28 gi|158255702|dbj|BAF83822.1| unnamed protein produ ( 626) 672 130.7 4.2e-28 gi|167774023|gb|ABZ92446.1| zinc finger protein 14 ( 626) 672 130.7 4.2e-28 gi|116014328|ref|NP_003433.3| zinc finger protein ( 638) 672 130.7 4.3e-28 gi|119588995|gb|EAW68589.1| zinc finger protein 14 ( 638) 672 130.7 4.3e-28 gi|126332461|ref|XP_001379338.1| PREDICTED: simila ( 637) 671 130.6 4.8e-28 gi|73988473|ref|XP_863874.1| PREDICTED: similar to ( 650) 671 130.6 4.9e-28 gi|73988471|ref|XP_863853.1| PREDICTED: similar to ( 665) 671 130.6 5e-28 gi|114636624|ref|XP_508277.2| PREDICTED: hypotheti ( 816) 672 130.9 5e-28 gi|73988469|ref|XP_542502.2| PREDICTED: similar to ( 670) 671 130.6 5e-28 gi|156214320|gb|EDO35311.1| predicted protein [Nem ( 265) 666 129.2 5.2e-28 gi|151554617|gb|AAI50014.1| ZNF143 protein [Bos ta ( 613) 659 128.4 2.1e-27 gi|22902397|gb|AAH37658.1| Zfp143 protein [Mus mus ( 598) 658 128.2 2.3e-27 >>gi|62087148|dbj|BAD92021.1| zinc finger protein 76 (ex (222 aa) initn: 1657 init1: 1657 opt: 1657 Z-score: 1618.0 bits: 306.6 E(): 1.8e-81 Smith-Waterman score: 1657; 100.000% identity (100.000% similar) in 222 aa overlap (1-222:1-222) 10 20 30 40 50 60 fj1823 GGRWRMRPHWVLISPPACHIWTGYGLKSHVRTHTGEKPYKCPEELCSKAFKTSGDLQKHV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GGRWRMRPHWVLISPPACHIWTGYGLKSHVRTHTGEKPYKCPEELCSKAFKTSGDLQKHV 10 20 30 40 50 60 70 80 90 100 110 120 fj1823 RTHTGERPFQCPFEGCGRSFTTSNIRKVHVRTHTGERPYTCPEPHCGRGFTSATNYKNHV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 RTHTGERPFQCPFEGCGRSFTTSNIRKVHVRTHTGERPYTCPEPHCGRGFTSATNYKNHV 70 80 90 100 110 120 130 140 150 160 170 180 fj1823 RIHTAQCPQGRSHTFARCQAAGNASPSTRACISTTWCTHTASPTPAAPAARPTGRPPPWP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 RIHTAQCPQGRSHTFARCQAAGNASPSTRACISTTWCTHTASPTPAAPAARPTGRPPPWP 130 140 150 160 170 180 190 200 210 220 fj1823 CTSAVPMASWRPRRRVSRPSMSSSNLRPPLQPRRVRHPNDPG :::::::::::::::::::::::::::::::::::::::::: gi|620 CTSAVPMASWRPRRRVSRPSMSSSNLRPPLQPRRVRHPNDPG 190 200 210 220 >>gi|119624219|gb|EAX03814.1| zinc finger protein 76 (ex (587 aa) initn: 746 init1: 746 opt: 763 Z-score: 748.1 bits: 147.0 E(): 5e-33 Smith-Waterman score: 763; 69.512% identity (81.707% similar) in 164 aa overlap (16-172:174-331) 10 20 30 40 fj1823 GGRWRMRPHWVLISPPACH--IWTGYGLKSHVRTHTGEKPYKCPE :.: . :::::::::::::::::::::: gi|119 KGCGRLYTTAHHLKVHERAHTGDRPYRCDFPSCGKAFATGYGLKSHVRTHTGEKPYKCPE 150 160 170 180 190 200 50 60 70 80 90 100 fj1823 ELCSKAFKTSGDLQKHVRTHTGERPFQCPFEGCGRSFTTSNIRKVHVRTHTGERPYTCPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ELCSKAFKTSGDLQKHVRTHTGERPFQCPFEGCGRSFTTSNIRKVHVRTHTGERPYTCPE 210 220 230 240 250 260 110 120 130 140 150 160 fj1823 PHCGRGFTSATNYKNHVRIHTAQCPQGRSHTFARCQAAGN--ASPSTRAC-ISTTWCTHT ::::::::::::::::::::: .:.. . .:. ..: . : .: . . gi|119 PHCGRGFTSATNYKNHVRIHT------ESQVSVPLPPSGSPFTNPVPHPCPLSFPLASPS 270 280 290 300 310 170 180 190 200 210 fj1823 ASP--TPAAPAARPTGRPPPWPCTSAVPMASWRPRRRVSRPSMSSSNLRPPLQPRRVRHP . : .:..:. .: gi|119 SHPPHSPVSPGEKPYVCTVPGCGKRFTEYSSLYKHHVVHTHCKPYTCSTCGKTYRQTSTL 320 330 340 350 360 370 >>gi|194379816|dbj|BAG58260.1| unnamed protein product [ (401 aa) initn: 1681 init1: 755 opt: 761 Z-score: 748.0 bits: 146.4 E(): 5.1e-33 Smith-Waterman score: 761; 67.429% identity (73.714% similar) in 175 aa overlap (16-181:200-371) 10 20 30 40 fj1823 GGRWRMRPHWVLISPPACH--IWTGYGLKSHVRTHTGEKPYKCPE :.: . :::::::::::::::::::::: gi|194 KGCGRLYTTAHHLKVHERAHTGDRPYRCDFPSCGKAFATGYGLKSHVRTHTGEKPYKCPE 170 180 190 200 210 220 50 60 70 80 90 100 fj1823 ELCSKAFKTSGDLQKHVRTHTGERPFQCPFEGCGRSFTTSNIRKVHVRTHTGERPYTCPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 ELCSKAFKTSGDLQKHVRTHTGERPFQCPFEGCGRSFTTSNIRKVHVRTHTGERPYTCPE 230 240 250 260 270 280 110 120 130 140 150 160 fj1823 PHCGRGFTSATNYKNHVRIHTAQCPQGRSHTFARC-QAAGNASPSTRACISTTWCTHTAS :::::::::::::::::::::.. : : : . . : . . : : :.: gi|194 PHCGRGFTSATNYKNHVRIHTGEKP--YVCTVPGCGKRFTEYSSLYKHHVVHTHCGHAAR 290 300 310 320 330 340 170 180 190 200 210 fj1823 PTPAAPAA------RPTGRPPPWPCTSAVPMASWRPRRRVSRPSMSSSNLRPPLQPRRVR . . : : : :: gi|194 GCDPGDNSVGEWLLSPRGLGPT-PCWRKCHLHGHSCPQGPRLWLTHRRWPHRSLG 350 360 370 380 390 400 >>gi|194378084|dbj|BAG57792.1| unnamed protein product [ (428 aa) initn: 1681 init1: 755 opt: 760 Z-score: 746.7 bits: 146.3 E(): 6e-33 Smith-Waterman score: 760; 92.174% identity (95.652% similar) in 115 aa overlap (16-128:200-314) 10 20 30 40 fj1823 GGRWRMRPHWVLISPPACH--IWTGYGLKSHVRTHTGEKPYKCPE :.: . :::::::::::::::::::::: gi|194 KGCGRLYTTAHHLKVHERAHTGDRPYRCDFPSCGKAFATGYGLKSHVRTHTGEKPYKCPE 170 180 190 200 210 220 50 60 70 80 90 100 fj1823 ELCSKAFKTSGDLQKHVRTHTGERPFQCPFEGCGRSFTTSNIRKVHVRTHTGERPYTCPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 ELCSKAFKTSGDLQKHVRTHTGERPFQCPFEGCGRSFTTSNIRKVHVRTHTGERPYTCPE 230 240 250 260 270 280 110 120 130 140 150 160 fj1823 PHCGRGFTSATNYKNHVRIHTAQCPQGRSHTFARCQAAGNASPSTRACISTTWCTHTASP :::::::::::::::::::::.. : gi|194 PHCGRGFTSATNYKNHVRIHTGEKPYVCTVPGCGKRFTEYSSLYKHHVVHTHCKPYTCST 290 300 310 320 330 340 >>gi|119624221|gb|EAX03816.1| zinc finger protein 76 (ex (515 aa) initn: 1681 init1: 755 opt: 760 Z-score: 745.8 bits: 146.4 E(): 6.7e-33 Smith-Waterman score: 760; 92.174% identity (95.652% similar) in 115 aa overlap (16-128:200-314) 10 20 30 40 fj1823 GGRWRMRPHWVLISPPACH--IWTGYGLKSHVRTHTGEKPYKCPE :.: . :::::::::::::::::::::: gi|119 KGCGRLYTTAHHLKVHERAHTGDRPYRCDFPSCGKAFATGYGLKSHVRTHTGEKPYKCPE 170 180 190 200 210 220 50 60 70 80 90 100 fj1823 ELCSKAFKTSGDLQKHVRTHTGERPFQCPFEGCGRSFTTSNIRKVHVRTHTGERPYTCPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ELCSKAFKTSGDLQKHVRTHTGERPFQCPFEGCGRSFTTSNIRKVHVRTHTGERPYTCPE 230 240 250 260 270 280 110 120 130 140 150 160 fj1823 PHCGRGFTSATNYKNHVRIHTAQCPQGRSHTFARCQAAGNASPSTRACISTTWCTHTASP :::::::::::::::::::::.. : gi|119 PHCGRGFTSATNYKNHVRIHTGEKPYVCTVPGCGKRFTEYSSLYKHHVVHTHCKPYTCST 290 300 310 320 330 340 >>gi|1293898|gb|AAA98739.1| zinc-finger protein (515 aa) initn: 1681 init1: 755 opt: 760 Z-score: 745.8 bits: 146.4 E(): 6.7e-33 Smith-Waterman score: 760; 92.174% identity (95.652% similar) in 115 aa overlap (16-128:200-314) 10 20 30 40 fj1823 GGRWRMRPHWVLISPPACH--IWTGYGLKSHVRTHTGEKPYKCPE :.: . :::::::::::::::::::::: gi|129 KGCGRLYTTAHHLKVHERAHTGDRPYRCDFPSCGKAFATGYGLKSHVRTHTGEKPYKCPE 170 180 190 200 210 220 50 60 70 80 90 100 fj1823 ELCSKAFKTSGDLQKHVRTHTGERPFQCPFEGCGRSFTTSNIRKVHVRTHTGERPYTCPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|129 ELCSKAFKTSGDLQKHVRTHTGERPFQCPFEGCGRSFTTSNIRKVHVRTHTGERPYTCPE 230 240 250 260 270 280 110 120 130 140 150 160 fj1823 PHCGRGFTSATNYKNHVRIHTAQCPQGRSHTFARCQAAGNASPSTRACISTTWCTHTASP :::::::::::::::::::::.. : gi|129 PHCGRGFTSATNYKNHVRIHTGEKPYVCTVPGCGKRFTEYSSLYNDHVVHTHCKPYTCST 290 300 310 320 330 340 >>gi|56208577|emb|CAI20189.1| zinc finger protein 76 (ex (544 aa) initn: 1681 init1: 755 opt: 760 Z-score: 745.5 bits: 146.4 E(): 7e-33 Smith-Waterman score: 760; 92.174% identity (95.652% similar) in 115 aa overlap (16-128:174-288) 10 20 30 40 fj1823 GGRWRMRPHWVLISPPACH--IWTGYGLKSHVRTHTGEKPYKCPE :.: . :::::::::::::::::::::: gi|562 KGCGRLYTTAHHLKVHERAHTGDRPYRCDFPSCGKAFATGYGLKSHVRTHTGEKPYKCPE 150 160 170 180 190 200 50 60 70 80 90 100 fj1823 ELCSKAFKTSGDLQKHVRTHTGERPFQCPFEGCGRSFTTSNIRKVHVRTHTGERPYTCPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|562 ELCSKAFKTSGDLQKHVRTHTGERPFQCPFEGCGRSFTTSNIRKVHVRTHTGERPYTCPE 210 220 230 240 250 260 110 120 130 140 150 160 fj1823 PHCGRGFTSATNYKNHVRIHTAQCPQGRSHTFARCQAAGNASPSTRACISTTWCTHTASP :::::::::::::::::::::.. : gi|562 PHCGRGFTSATNYKNHVRIHTGEKPYVCTVPGCGKRFTEYSSLYKHHVVHTHCKPYTCST 270 280 290 300 310 320 >>gi|20455531|sp|P36508|ZNF76_HUMAN Zinc finger protein (570 aa) initn: 1681 init1: 755 opt: 760 Z-score: 745.3 bits: 146.4 E(): 7.2e-33 Smith-Waterman score: 760; 92.174% identity (95.652% similar) in 115 aa overlap (16-128:200-314) 10 20 30 40 fj1823 GGRWRMRPHWVLISPPACH--IWTGYGLKSHVRTHTGEKPYKCPE :.: . :::::::::::::::::::::: gi|204 KGCGRLYTTAHHLKVHERAHTGDRPYRCDFPSCGKAFATGYGLKSHVRTHTGEKPYKCPE 170 180 190 200 210 220 50 60 70 80 90 100 fj1823 ELCSKAFKTSGDLQKHVRTHTGERPFQCPFEGCGRSFTTSNIRKVHVRTHTGERPYTCPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|204 ELCSKAFKTSGDLQKHVRTHTGERPFQCPFEGCGRSFTTSNIRKVHVRTHTGERPYTCPE 230 240 250 260 270 280 110 120 130 140 150 160 fj1823 PHCGRGFTSATNYKNHVRIHTAQCPQGRSHTFARCQAAGNASPSTRACISTTWCTHTASP :::::::::::::::::::::.. : gi|204 PHCGRGFTSATNYKNHVRIHTGEKPYVCTVPGCGKRFTEYSSLYKHHVVHTHCKPYTCST 290 300 310 320 330 340 >>gi|114607046|ref|XP_001172128.1| PREDICTED: zinc finge (421 aa) initn: 1567 init1: 749 opt: 754 Z-score: 741.0 bits: 145.2 E(): 1.2e-32 Smith-Waterman score: 754; 91.304% identity (95.652% similar) in 115 aa overlap (16-128:51-165) 10 20 30 40 fj1823 GGRWRMRPHWVLISPPACH--IWTGYGLKSHVRTHTGEKPYKCPE :.: . :::::::::::::::::::::: gi|114 YPCSSELCDCLSSQVHERAHTGDRPYRCDFPSCGKAFATGYGLKSHVRTHTGEKPYKCPE 30 40 50 60 70 80 50 60 70 80 90 100 fj1823 ELCSKAFKTSGDLQKHVRTHTGERPFQCPFEGCGRSFTTSNIRKVHVRTHTGERPYTCPE ::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::: gi|114 ELCSKAFKTSGDLQKHVRTHTGERPFRCPFEGCGRSFTTSNIRKVHVRTHTGERPYTCPE 90 100 110 120 130 140 110 120 130 140 150 160 fj1823 PHCGRGFTSATNYKNHVRIHTAQCPQGRSHTFARCQAAGNASPSTRACISTTWCTHTASP :::::::::::::::::::::.. : gi|114 PHCGRGFTSATNYKNHVRIHTGEKPYVCTVPGCGKRFTEYSSLYKHHVVHTHCKPYTCST 150 160 170 180 190 200 >>gi|114607044|ref|XP_001172105.1| PREDICTED: zinc finge (499 aa) initn: 1675 init1: 749 opt: 754 Z-score: 740.2 bits: 145.3 E(): 1.4e-32 Smith-Waterman score: 754; 91.304% identity (95.652% similar) in 115 aa overlap (16-128:200-314) 10 20 30 40 fj1823 GGRWRMRPHWVLISPPACH--IWTGYGLKSHVRTHTGEKPYKCPE :.: . :::::::::::::::::::::: gi|114 KGCGRLYTTAHHLKVHERAHTGDRPYRCDFPSCGKAFATGYGLKSHVRTHTGEKPYKCPE 170 180 190 200 210 220 50 60 70 80 90 100 fj1823 ELCSKAFKTSGDLQKHVRTHTGERPFQCPFEGCGRSFTTSNIRKVHVRTHTGERPYTCPE ::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::: gi|114 ELCSKAFKTSGDLQKHVRTHTGERPFRCPFEGCGRSFTTSNIRKVHVRTHTGERPYTCPE 230 240 250 260 270 280 110 120 130 140 150 160 fj1823 PHCGRGFTSATNYKNHVRIHTAQCPQGRSHTFARCQAAGNASPSTRACISTTWCTHTASP :::::::::::::::::::::.. : gi|114 PHCGRGFTSATNYKNHVRIHTGEKPYVCTVPGCGKRFTEYSSLYKHHVVHTHCKPYTCST 290 300 310 320 330 340 222 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Sun Aug 10 19:06:36 2008 done: Sun Aug 10 19:09:26 2008 Total Scan time: 643.630 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]