hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-19092733/chunk_1/iprscan-20080810-19092733.nocrc
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Query sequence: fj18232
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                          90.3    5.6e-24   3
PF00096.16.fs Zinc finger, C2H2 type                          86.5    7.7e-23   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.fs   2/4      39    63 ..     1    24 []    31.7  1.2e-06
PF00096.16.ls   1/3      39    63 ..     1    24 []    33.7    6e-07
PF00096.16.fs   3/4      69    93 ..     1    24 []    23.2  0.00016
PF00096.16.ls   2/3      69    93 ..     1    24 []    25.2  0.00022
PF00096.16.fs   4/4      99   123 ..     1    24 []    29.4  4.4e-06
PF00096.16.ls   3/3      99   123 ..     1    24 []    31.4  2.9e-06

Alignments of top-scoring domains:
PF00096.16.fs: domain 2 of 4, from 39 to 63: score 31.7, E = 1.2e-06
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      ykCp + C k+F+++++L++H rtH   
     fj18232    39    YKCPEeLCSKAFKTSGDLQKHVRTH    63   

PF00096.16.ls: domain 1 of 3, from 39 to 63: score 33.7, E = 6e-07
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      ykCp + C k+F+++++L++H rtH   
     fj18232    39    YKCPEeLCSKAFKTSGDLQKHVRTH    63   

PF00096.16.fs: domain 3 of 4, from 69 to 93: score 23.2, E = 0.00016
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      ++Cpf++Cg+sF+++   k H rtH   
     fj18232    69    FQCPFeGCGRSFTTSNIRKVHVRTH    93   

PF00096.16.ls: domain 2 of 3, from 69 to 93: score 25.2, E = 0.00022
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      ++Cpf++Cg+sF+++   k H rtH   
     fj18232    69    FQCPFeGCGRSFTTSNIRKVHVRTH    93   

PF00096.16.fs: domain 4 of 4, from 99 to 123: score 29.4, E = 4.4e-06
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      y+Cp ++Cg+ F++  n+k+H r+H   
     fj18232    99    YTCPEpHCGRGFTSATNYKNHVRIH    123  

PF00096.16.ls: domain 3 of 3, from 99 to 123: score 31.4, E = 2.9e-06
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      y+Cp ++Cg+ F++  n+k+H r+H   
     fj18232    99    YTCPEpHCGRGFTSATNYKNHVRIH    123  

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