hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-19092733/chunk_1/iprscan-20080810-19092733.nocrc
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Query sequence: fj18232
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                  85.2      8e-21   3

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/3      39    63 ..     1    23 []    28.4    0.001
SM00355      2/3      69    93 ..     1    23 []    27.2   0.0023
SM00355      3/3      99   123 ..     1    23 []    29.7  0.00041

Alignments of top-scoring domains:
SM00355: domain 1 of 3, from 39 to 63: score 28.4, E = 0.001
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      ykCp++ C+k f++ ++L++H+r+H   
     fj18232    39    YKCPEeLCSKAFKTSgDLQKHVRTH    63   

SM00355: domain 2 of 3, from 69 to 93: score 27.2, E = 0.0023
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      ++Cp++gCg+sf++ +  k H+r+H   
     fj18232    69    FQCPFeGCGRSFTTSnIRKVHVRTH    93   

SM00355: domain 3 of 3, from 99 to 123: score 29.7, E = 0.00041
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      y+Cp++ Cg+ f+s++++k+H+r+H   
     fj18232    99    YTCPEpHCGRGFTSAtNYKNHVRIH    123  

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