hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-19154522/chunk_1/iprscan-20080810-19154522.nocrc
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Query sequence: fj18320
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00646.23.ls F-box domain                                    46.9    6.4e-11   1
PF00646.23.fs F-box domain                                    44.9    6.9e-11   1
PF00560.23.ls Leucine Rich Repeat                             25.7    0.00016   6
PF07723.3.ls Leucine Rich Repeat                             11.6       0.38   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00646.23.fs   1/1     102   149 ..     1    46 []    44.9  6.9e-11
PF00646.23.ls   1/1     102   149 ..     1    46 []    46.9  6.4e-11
PF00560.23.ls   3/6     238   261 ..     1    24 []     8.6      6.6
PF07723.3.ls   1/1     238   263 ..     1    26 []    11.6     0.38

Alignments of top-scoring domains:
PF00646.23.fs: domain 1 of 1, from 102 to 149: score 44.9, E = 6.9e-11
                   *->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwk.kl
                       s+++LPdelll I+s+L + +ll++s V+krw++l+++ +lw++  
     fj18320   102    VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDEsLWQtLD 148  

                   l<-*
                   l   
     fj18320   149 L    149  

PF00646.23.ls: domain 1 of 1, from 102 to 149: score 46.9, E = 6.4e-11
                   *->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwk.kl
                       s+++LPdelll I+s+L + +ll++s V+krw++l+++ +lw++  
     fj18320   102    VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDEsLWQtLD 148  

                   l<-*
                   l   
     fj18320   149 L    149  

PF00560.23.ls: domain 3 of 6, from 238 to 261: score 8.6, E = 6.6
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      nL  L+LsgC  +++ +++  +l +    
     fj18320   238    NLVRLNLSGC-SGFS-EFALQtLlSS    261  

PF07723.3.ls: domain 1 of 1, from 238 to 263: score 11.6, E = 0.38
                   *->sLKtLhLdsVkfsddeslekLLSgCP<-*
                      +L  L L+ +  +++ +l++LLS+C+   
     fj18320   238    NLVRLNLSGCSGFSEFALQTLLSSCS    263  

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