# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofj19046.fasta.nr -Q fj19046.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fj19046, 961 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6839085 sequences Expectation_n fit: rho(ln(x))= 5.5051+/-0.000188; mu= 12.5687+/- 0.010 mean_var=77.5055+/-15.447, 0's: 32 Z-trim: 63 B-trim: 2697 in 1/63 Lambda= 0.145683 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62087434|dbj|BAD92164.1| protocadherin gamma su ( 961) 6221 1317.6 0 gi|119582340|gb|EAW61936.1| hCG1982215, isoform CR ( 932) 6029 1277.2 0 gi|37999840|sp|Q9Y5H0.1|PCDG3_HUMAN Protocadherin ( 932) 6014 1274.0 0 gi|62510870|sp|Q5DRB7.1|PCDG3_PANTR Protocadherin ( 932) 5997 1270.5 0 gi|50512402|gb|AAT77596.1| protocadherin gamma a3 ( 929) 5200 1103.0 0 gi|5457068|gb|AAD43770.1|AF152510_1 protocadherin ( 829) 5187 1100.2 0 gi|13876332|gb|AAK26086.1| protocadherin gamma A3 ( 928) 5186 1100.0 0 gi|62510871|sp|Q5DRB8.1|PCDG2_PANTR Protocadherin ( 932) 4743 1006.9 0 gi|37999841|sp|Q9Y5H1.1|PCDG2_HUMAN Protocadherin ( 932) 4713 1000.6 0 gi|62510869|sp|Q5DRB6.1|PCDG4_PANTR Protocadherin ( 931) 4694 996.6 0 gi|127139358|ref|NP_001076029.1| protocadherin gam ( 962) 4694 996.6 0 gi|37999839|sp|Q9Y5G9.1|PCDG4_HUMAN Protocadherin ( 931) 4682 994.1 0 gi|62510867|sp|Q5DRB4.1|PCDG6_PANTR Protocadherin ( 932) 4665 990.5 0 gi|127138659|ref|NP_001076033.1| protocadherin gam ( 932) 4655 988.4 0 gi|37999837|sp|Q9Y5G7.1|PCDG6_HUMAN Protocadherin ( 932) 4653 988.0 0 gi|62087936|dbj|BAD92415.1| protocadherin gamma su ( 950) 4647 986.7 0 gi|62510866|sp|Q5DRB3.1|PCDG7_PANTR Protocadherin ( 932) 4644 986.1 0 gi|37999836|sp|Q9Y5G6.1|PCDG7_HUMAN Protocadherin ( 932) 4622 981.5 0 gi|29436767|gb|AAH49814.1| Protocadherin gamma sub ( 930) 4617 980.4 0 gi|149017319|gb|EDL76370.1| rCG49295, isoform CRA_ ( 930) 4615 980.0 0 gi|62510874|sp|Q5DRC1.1|PCDGA_PANTR Protocadherin ( 936) 4614 979.8 0 gi|148678175|gb|EDL10122.1| mCG133388, isoform CRA ( 930) 4613 979.6 0 gi|13876334|gb|AAK26087.1| protocadherin gamma A4 ( 930) 4603 977.5 0 gi|13876330|gb|AAK26085.1| protocadherin gamma A2 ( 931) 4594 975.6 0 gi|62510865|sp|Q5DRB2.1|PCDG8_PANTR Protocadherin ( 932) 4593 975.4 0 gi|37999843|sp|Q9Y5H3.1|PCDGA_HUMAN Protocadherin ( 936) 4587 974.1 0 gi|62510868|sp|Q5DRB5.1|PCDG5_PANTR Protocadherin ( 931) 4575 971.6 0 gi|37999835|sp|Q9Y5G5.1|PCDG8_HUMAN Protocadherin ( 932) 4571 970.8 0 gi|37999838|sp|Q9Y5G8.1|PCDG5_HUMAN Protocadherin ( 931) 4569 970.3 0 gi|119582334|gb|EAW61930.1| hCG1982215, isoform CR ( 931) 4566 969.7 0 gi|37999844|sp|Q9Y5H4.1|PCDG1_HUMAN Protocadherin ( 931) 4565 969.5 0 gi|148678182|gb|EDL10129.1| mCG133388, isoform CRA ( 935) 4565 969.5 0 gi|50512398|gb|AAT77594.1| protocadherin gamma a2 ( 931) 4564 969.3 0 gi|50512410|gb|AAT77600.1| protocadherin gamma a7 ( 934) 4564 969.3 0 gi|50417635|gb|AAH77712.1| Protocadherin gamma sub ( 935) 4562 968.9 0 gi|62510875|sp|Q5DRC2.1|PCDG1_PANTR Protocadherin ( 931) 4559 968.2 0 gi|13876340|gb|AAK26090.1| protocadherin gamma A7 ( 935) 4556 967.6 0 gi|62087496|dbj|BAD92195.1| protocadherin gamma su ( 895) 4549 966.1 0 gi|37999478|sp|O60330.1|PCDGC_HUMAN Protocadherin ( 932) 4540 964.3 0 gi|76623324|ref|XP_588577.2| PREDICTED: protocadhe ( 830) 4536 963.4 0 gi|62510872|sp|Q5DRB9.1|PCDGC_PANTR Protocadherin ( 932) 4524 960.9 0 gi|114602391|ref|XP_001149871.1| PREDICTED: simila ( 934) 4524 960.9 0 gi|194219810|ref|XP_001918052.1| PREDICTED: protoc ( 830) 4513 958.5 0 gi|62510873|sp|Q5DRC0.1|PCDGB_PANTR Protocadherin ( 935) 4500 955.8 0 gi|37999842|sp|Q9Y5H2.1|PCDGB_HUMAN Protocadherin ( 935) 4499 955.6 0 gi|13876324|gb|AAK26082.1| protocadherin gamma A10 ( 930) 4464 948.3 0 gi|148678185|gb|EDL10132.1| mCG133388, isoform CRA ( 930) 4463 948.1 0 gi|148743906|gb|AAI42515.1| PCDHGA8 protein [Bos t ( 932) 4461 947.6 0 gi|50512392|gb|AAT77591.1| protocadherin gamma a10 ( 929) 4446 944.5 0 gi|13876326|gb|AAK26083.1| protocadherin gamma A11 ( 933) 4437 942.6 0 >>gi|62087434|dbj|BAD92164.1| protocadherin gamma subfam (961 aa) initn: 6221 init1: 6221 opt: 6221 Z-score: 7059.1 bits: 1317.6 E(): 0 Smith-Waterman score: 6221; 100.000% identity (100.000% similar) in 961 aa overlap (1-961:1-961) 10 20 30 40 50 60 fj1904 KTSFLEKIRLESVVGNWNRIQRKRFTEKEMTNCLSFRNGRGLALLCALLGTLCETGSGQI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 KTSFLEKIRLESVVGNWNRIQRKRFTEKEMTNCLSFRNGRGLALLCALLGTLCETGSGQI 10 20 30 40 50 60 70 80 90 100 110 120 fj1904 RYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSRGRTQLFSLNSQSGSLVTAERID :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 RYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSRGRTQLFSLNSQSGSLVTAERID 70 80 90 100 110 120 130 140 150 160 170 180 fj1904 REELCAQIPLCLVKINILVEDKLKIFEVEIEIKDINDNAPNFPTEELEIKIGELTVPGTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 REELCAQIPLCLVKINILVEDKLKIFEVEIEIKDINDNAPNFPTEELEIKIGELTVPGTR 130 140 150 160 170 180 190 200 210 220 230 240 fj1904 FPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGAKYPELVLERALDREKKEIHQLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 FPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGAKYPELVLERALDREKKEIHQLV 190 200 210 220 230 240 250 260 270 280 290 300 fj1904 LVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRVSVWENVPVGTRLLTVNATDPDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 LVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRVSVWENVPVGTRLLTVNATDPDE 250 260 270 280 290 300 310 320 330 340 350 360 fj1904 GFNAQVSYILDKMPGKIAEIFHLNSVSGEVSILKSLDYEDAMFYEIKIEAQDGPGLLSRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GFNAQVSYILDKMPGKIAEIFHLNSVSGEVSILKSLDYEDAMFYEIKIEAQDGPGLLSRA 310 320 330 340 350 360 370 380 390 400 410 420 fj1904 KILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIALIDVHDRDSGQNGQVEVFVLGNLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 KILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIALIDVHDRDSGQNGQVEVFVLGNLP 370 380 390 400 410 420 430 440 450 460 470 480 fj1904 FKLEKSIDQYYRLVTATSLDREQISEYNISLRASDGGSPPLSTETHITLHVIDINDNPPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 FKLEKSIDQYYRLVTATSLDREQISEYNISLRASDGGSPPLSTETHITLHVIDINDNPPT 430 440 450 460 470 480 490 500 510 520 530 540 fj1904 FPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARITYALTEDTLQGAPLSSFVSINSNT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 FPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARITYALTEDTLQGAPLSSFVSINSNT 490 500 510 520 530 540 550 560 570 580 590 600 fj1904 GVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLNLFVLDQNDNAPEILYPALPTDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLNLFVLDQNDNAPEILYPALPTDG 550 560 570 580 590 600 610 620 630 640 650 660 fj1904 STGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTARA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 STGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTARA 610 620 630 640 650 660 670 680 690 700 710 720 fj1904 LLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDILADLGSLEPSAKPNDSDLTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 LLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDILADLGSLEPSAKPNDSDLTL 670 680 690 700 710 720 730 740 750 760 770 780 fj1904 YLVVAVAAVSCVFLAFVIVLLALRLRRWHKSRLLQASGGGLASTPGSHFVGADGVRAFLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 YLVVAVAAVSCVFLAFVIVLLALRLRRWHKSRLLQASGGGLASTPGSHFVGADGVRAFLQ 730 740 750 760 770 780 790 800 810 820 830 840 fj1904 TYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKSEPLLITQDLLEMKGDSNLLQQAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 TYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKSEPLLITQDLLEMKGDSNLLQQAP 790 800 810 820 830 840 850 860 870 880 890 900 fj1904 PNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 PNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAG 850 860 870 880 890 900 910 920 930 940 950 960 fj1904 TMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 TMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEK 910 920 930 940 950 960 fj1904 K : gi|620 K >>gi|119582340|gb|EAW61936.1| hCG1982215, isoform CRA_o (932 aa) initn: 6029 init1: 6029 opt: 6029 Z-score: 6841.2 bits: 1277.2 E(): 0 Smith-Waterman score: 6029; 99.893% identity (99.893% similar) in 932 aa overlap (30-961:1-932) 10 20 30 40 50 60 fj1904 KTSFLEKIRLESVVGNWNRIQRKRFTEKEMTNCLSFRNGRGLALLCALLGTLCETGSGQI ::::::::::::::::::::::::::::::: gi|119 MTNCLSFRNGRGLALLCALLGTLCETGSGQI 10 20 30 70 80 90 100 110 120 fj1904 RYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSRGRTQLFSLNSQSGSLVTAERID ::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::: gi|119 RYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSRGRTQLFSLNPQSGSLVTAERID 40 50 60 70 80 90 130 140 150 160 170 180 fj1904 REELCAQIPLCLVKINILVEDKLKIFEVEIEIKDINDNAPNFPTEELEIKIGELTVPGTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 REELCAQIPLCLVKINILVEDKLKIFEVEIEIKDINDNAPNFPTEELEIKIGELTVPGTR 100 110 120 130 140 150 190 200 210 220 230 240 fj1904 FPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGAKYPELVLERALDREKKEIHQLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 FPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGAKYPELVLERALDREKKEIHQLV 160 170 180 190 200 210 250 260 270 280 290 300 fj1904 LVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRVSVWENVPVGTRLLTVNATDPDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRVSVWENVPVGTRLLTVNATDPDE 220 230 240 250 260 270 310 320 330 340 350 360 fj1904 GFNAQVSYILDKMPGKIAEIFHLNSVSGEVSILKSLDYEDAMFYEIKIEAQDGPGLLSRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GFNAQVSYILDKMPGKIAEIFHLNSVSGEVSILKSLDYEDAMFYEIKIEAQDGPGLLSRA 280 290 300 310 320 330 370 380 390 400 410 420 fj1904 KILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIALIDVHDRDSGQNGQVEVFVLGNLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 KILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIALIDVHDRDSGQNGQVEVFVLGNLP 340 350 360 370 380 390 430 440 450 460 470 480 fj1904 FKLEKSIDQYYRLVTATSLDREQISEYNISLRASDGGSPPLSTETHITLHVIDINDNPPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 FKLEKSIDQYYRLVTATSLDREQISEYNISLRASDGGSPPLSTETHITLHVIDINDNPPT 400 410 420 430 440 450 490 500 510 520 530 540 fj1904 FPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARITYALTEDTLQGAPLSSFVSINSNT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 FPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARITYALTEDTLQGAPLSSFVSINSNT 460 470 480 490 500 510 550 560 570 580 590 600 fj1904 GVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLNLFVLDQNDNAPEILYPALPTDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLNLFVLDQNDNAPEILYPALPTDG 520 530 540 550 560 570 610 620 630 640 650 660 fj1904 STGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTARA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 STGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTARA 580 590 600 610 620 630 670 680 690 700 710 720 fj1904 LLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDILADLGSLEPSAKPNDSDLTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDILADLGSLEPSAKPNDSDLTL 640 650 660 670 680 690 730 740 750 760 770 780 fj1904 YLVVAVAAVSCVFLAFVIVLLALRLRRWHKSRLLQASGGGLASTPGSHFVGADGVRAFLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 YLVVAVAAVSCVFLAFVIVLLALRLRRWHKSRLLQASGGGLASTPGSHFVGADGVRAFLQ 700 710 720 730 740 750 790 800 810 820 830 840 fj1904 TYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKSEPLLITQDLLEMKGDSNLLQQAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKSEPLLITQDLLEMKGDSNLLQQAP 760 770 780 790 800 810 850 860 870 880 890 900 fj1904 PNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 PNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAG 820 830 840 850 860 870 910 920 930 940 950 960 fj1904 TMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEK 880 890 900 910 920 930 fj1904 K : gi|119 K >>gi|37999840|sp|Q9Y5H0.1|PCDG3_HUMAN Protocadherin gamm (932 aa) initn: 6014 init1: 6014 opt: 6014 Z-score: 6824.2 bits: 1274.0 E(): 0 Smith-Waterman score: 6014; 99.571% identity (99.785% similar) in 932 aa overlap (30-961:1-932) 10 20 30 40 50 60 fj1904 KTSFLEKIRLESVVGNWNRIQRKRFTEKEMTNCLSFRNGRGLALLCALLGTLCETGSGQI ::::::::::::::::::::::::::::.:: gi|379 MTNCLSFRNGRGLALLCALLGTLCETGSSQI 10 20 30 70 80 90 100 110 120 fj1904 RYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSRGRTQLFSLNSQSGSLVTAERID ::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::: gi|379 RYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSRGRTQLFSLNPQSGSLVTAERID 40 50 60 70 80 90 130 140 150 160 170 180 fj1904 REELCAQIPLCLVKINILVEDKLKIFEVEIEIKDINDNAPNFPTEELEIKIGELTVPGTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 REELCAQIPLCLVKINILVEDKLKIFEVEIEIKDINDNAPNFPTEELEIKIGELTVPGTR 100 110 120 130 140 150 190 200 210 220 230 240 fj1904 FPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGAKYPELVLERALDREKKEIHQLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 FPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGAKYPELVLERALDREKKEIHQLV 160 170 180 190 200 210 250 260 270 280 290 300 fj1904 LVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRVSVWENVPVGTRLLTVNATDPDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 LVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRVSVWENVPVGTRLLTVNATDPDE 220 230 240 250 260 270 310 320 330 340 350 360 fj1904 GFNAQVSYILDKMPGKIAEIFHLNSVSGEVSILKSLDYEDAMFYEIKIEAQDGPGLLSRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 GFNAQVSYILDKMPGKIAEIFHLNSVSGEVSILKSLDYEDAMFYEIKIEAQDGPGLLSRA 280 290 300 310 320 330 370 380 390 400 410 420 fj1904 KILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIALIDVHDRDSGQNGQVEVFVLGNLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 KILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIALIDVHDRDSGQNGQVEVFVLGNLP 340 350 360 370 380 390 430 440 450 460 470 480 fj1904 FKLEKSIDQYYRLVTATSLDREQISEYNISLRASDGGSPPLSTETHITLHVIDINDNPPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 FKLEKSIDQYYRLVTATSLDREQISEYNISLRASDGGSPPLSTETHITLHVIDINDNPPT 400 410 420 430 440 450 490 500 510 520 530 540 fj1904 FPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARITYALTEDTLQGAPLSSFVSINSNT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 FPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARITYALTEDTLQGAPLSSFVSINSNT 460 470 480 490 500 510 550 560 570 580 590 600 fj1904 GVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLNLFVLDQNDNAPEILYPALPTDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 GVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLNLFVLDQNDNAPEILYPALPTDG 520 530 540 550 560 570 610 620 630 640 650 660 fj1904 STGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTARA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 STGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTARA 580 590 600 610 620 630 670 680 690 700 710 720 fj1904 LLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDILADLGSLEPSAKPNDSDLTL ::::::::::::::.:::::::::::::: :::::::::::::::::::::::::::::: gi|379 LLDRDALKQSLVVAIQDHGQPPLSATVTLIVAVADRIPDILADLGSLEPSAKPNDSDLTL 640 650 660 670 680 690 730 740 750 760 770 780 fj1904 YLVVAVAAVSCVFLAFVIVLLALRLRRWHKSRLLQASGGGLASTPGSHFVGADGVRAFLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 YLVVAVAAVSCVFLAFVIVLLALRLRRWHKSRLLQASGGGLASTPGSHFVGADGVRAFLQ 700 710 720 730 740 750 790 800 810 820 830 840 fj1904 TYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKSEPLLITQDLLEMKGDSNLLQQAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 TYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKSEPLLITQDLLEMKGDSNLLQQAP 760 770 780 790 800 810 850 860 870 880 890 900 fj1904 PNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 PNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAG 820 830 840 850 860 870 910 920 930 940 950 960 fj1904 TMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 TMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEK 880 890 900 910 920 930 fj1904 K : gi|379 K >>gi|62510870|sp|Q5DRB7.1|PCDG3_PANTR Protocadherin gamm (932 aa) initn: 5997 init1: 5997 opt: 5997 Z-score: 6804.9 bits: 1270.5 E(): 0 Smith-Waterman score: 5997; 99.142% identity (99.785% similar) in 932 aa overlap (30-961:1-932) 10 20 30 40 50 60 fj1904 KTSFLEKIRLESVVGNWNRIQRKRFTEKEMTNCLSFRNGRGLALLCALLGTLCETGSGQI ::::::::::::::::::::::::::::::: gi|625 MTNCLSFRNGRGLALLCALLGTLCETGSGQI 10 20 30 70 80 90 100 110 120 fj1904 RYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSRGRTQLFSLNSQSGSLVTAERID ::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::: gi|625 RYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSRGRTQLFSLNPQSGSLVTAERID 40 50 60 70 80 90 130 140 150 160 170 180 fj1904 REELCAQIPLCLVKINILVEDKLKIFEVEIEIKDINDNAPNFPTEELEIKIGELTVPGTR ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: gi|625 REELCAQIPLCLVKFNILVEDKLKIFEVEIEIKDINDNAPNFPTEELEIKIGELTVPGTR 100 110 120 130 140 150 190 200 210 220 230 240 fj1904 FPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGAKYPELVLERALDREKKEIHQLV ::.::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|625 FPLKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGAKYPELVLERALDREKREIHQLV 160 170 180 190 200 210 250 260 270 280 290 300 fj1904 LVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRVSVWENVPVGTRLLTVNATDPDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 LVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRVSVWENVPVGTRLLTVNATDPDE 220 230 240 250 260 270 310 320 330 340 350 360 fj1904 GFNAQVSYILDKMPGKIAEIFHLNSVSGEVSILKSLDYEDAMFYEIKIEAQDGPGLLSRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 GFNAQVSYILDKMPGKIAEIFHLNSVSGEVSILKSLDYEDAMFYEIKIEAQDGPGLLSRA 280 290 300 310 320 330 370 380 390 400 410 420 fj1904 KILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIALIDVHDRDSGQNGQVEVFVLGNLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 KILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIALIDVHDRDSGQNGQVEVFVLGNLP 340 350 360 370 380 390 430 440 450 460 470 480 fj1904 FKLEKSIDQYYRLVTATSLDREQISEYNISLRASDGGSPPLSTETHITLHVIDINDNPPT ::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 FKLEKSVDQYYRLVTATSLDREQISEYNISLRASDGGSPPLSTETHITLHVIDINDNPPT 400 410 420 430 440 450 490 500 510 520 530 540 fj1904 FPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARITYALTEDTLQGAPLSSFVSINSNT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 FPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARITYALTEDTLQGAPLSSFVSINSNT 460 470 480 490 500 510 550 560 570 580 590 600 fj1904 GVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLNLFVLDQNDNAPEILYPALPTDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 GVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLNLFVLDQNDNAPEILYPALPTDG 520 530 540 550 560 570 610 620 630 640 650 660 fj1904 STGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTARA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 STGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTARA 580 590 600 610 620 630 670 680 690 700 710 720 fj1904 LLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDILADLGSLEPSAKPNDSDLTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 LLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDILADLGSLEPSAKPNDSDLTL 640 650 660 670 680 690 730 740 750 760 770 780 fj1904 YLVVAVAAVSCVFLAFVIVLLALRLRRWHKSRLLQASGGGLASTPGSHFVGADGVRAFLQ :::::::::::::::.:::::: ::::::::::::::::::::::::::::.:::::::: gi|625 YLVVAVAAVSCVFLALVIVLLAHRLRRWHKSRLLQASGGGLASTPGSHFVGVDGVRAFLQ 700 710 720 730 740 750 790 800 810 820 830 840 fj1904 TYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKSEPLLITQDLLEMKGDSNLLQQAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 TYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKSEPLLITQDLLEMKGDSNLLQQAP 760 770 780 790 800 810 850 860 870 880 890 900 fj1904 PNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 PNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAG 820 830 840 850 860 870 910 920 930 940 950 960 fj1904 TMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 TMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEK 880 890 900 910 920 930 fj1904 K : gi|625 K >>gi|50512402|gb|AAT77596.1| protocadherin gamma a3 [Rat (929 aa) initn: 5189 init1: 5189 opt: 5200 Z-score: 5899.6 bits: 1103.0 E(): 0 Smith-Waterman score: 5200; 86.192% identity (94.822% similar) in 927 aa overlap (37-961:3-929) 10 20 30 40 50 60 fj1904 KIRLESVVGNWNRIQRKRFTEKEMTNCLSFRNGRGLA--LLCALLGTLCETGSGQIRYSV : ::: : ::::::::: .: :::::: gi|505 MIRLGRGTAGALLCALLGTLSAAGFRQIRYSV 10 20 30 70 80 90 100 110 120 fj1904 SEELDKGSFVGNIANDLGLEPRELAERGVRIVSRGRTQLFSLNSQSGSLVTAERIDREEL :::::::.::::..::::::.:::::::::.::::.:::::. .::::::: ::::::: gi|505 PEELDKGSYVGNISKDLGLEPHELAERGVRIISRGRSQLFSLDPRSGSLVTAGRIDREEL 40 50 60 70 80 90 130 140 150 160 170 180 fj1904 CAQIPLCLVKINILVEDKLKIFEVEIEIKDINDNAPNFPTEELEIKIGELTVPGTRFPIK ::: :.:..::::::::::::::..:.:::::::.:::::::::::::::::::::.: gi|505 CAQSAPCVVSFNILVEDKLKIFEVEVDISDINDNAPSFPTEELEIKIGELTVPGTRFPLK 100 110 120 130 140 150 190 200 210 220 230 240 fj1904 TAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGAKYPELVLERALDREKKEIHQLVLVAS ::::::::.::::::::. ::::::::::: . ::::::::::::::::: .::: :.:: gi|505 TAFDPDVGMNSLQNYKLNSNDYFSLAVNSVIDDAKYPELVLERALDREKKAVHQLDLIAS 160 170 180 190 200 210 250 260 270 280 290 300 fj1904 DGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRVSVWENVPVGTRLLTVNATDPDEGFNA :::::.:.:.: :::::::::::::.::.::::::: ::::::::: ::::::::::::: gi|505 DGGDPAHTGKLCIQVIVLDANDNPPVFTKPEYRVSVLENVPVGTRLTTVNATDPDEGFNA 220 230 240 250 260 270 310 320 330 340 350 360 fj1904 QVSYILDKMPGKIAEIFHLNSVSGEVSILKSLDYEDAMFYEIKIEAQDGPGLLSRAKILV ::::::::::::::.:::::::.:.::::::::::::.::::::::::::::.::::::: gi|505 QVSYILDKMPGKIAQIFHLNSVTGDVSILKSLDYEDAVFYEIKIEAQDGPGLFSRAKILV 280 290 300 310 320 330 370 380 390 400 410 420 fj1904 TVLDVNDNAPEITITSLTSSVPEEGTVGREIALIDVHDRDSGQNGQVEVFVLGNLPFKLE ::::::::::::..::::::::::. .:::::::.:::::::::::: ::::::::: :: gi|505 TVLDVNDNAPEISVTSLTSSVPEEAPAGREIALINVHDRDSGQNGQVSVFVLGNLPFTLE 340 350 360 370 380 390 430 440 450 460 470 480 fj1904 KSIDQYYRLVTATSLDREQISEYNISLRASDGGSPPLSTETHITLHVIDINDNPPTFPHL :::::::::::: :::.:. :.:::::::.::::::::::::::::: ::::::::: . gi|505 KSIDQYYRLVTARSLDHEKESQYNISLRATDGGSPPLSTETHITLHVTDINDNPPTFTRA 400 410 420 430 440 450 490 500 510 520 530 540 fj1904 SYSAYIPENNPRGASIFSVTAQDPDSNNNARITYALTEDTLQGAPLSSFVSINSNTGVLY :: ::::::: ::::::::::::::...::.:::.:.::::::.:::::::::::::::: gi|505 SYLAYIPENNARGASIFSVTAQDPDTDKNAQITYSLAEDTLQGVPLSSFVSINSNTGVLY 460 470 480 490 500 510 550 560 570 580 590 600 fj1904 ALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLNLFVLDQNDNAPEILYPALPTDGSTGV :: ::::::::::.: .:: :::::::::: .:.:::::.:::.:::::::::.:::::: gi|505 ALCSFDYEQFRDLQLHITARDSGNPPLSSNSTLSLFVLDKNDNSPEILYPALPVDGSTGV 520 530 540 550 560 570 610 620 630 640 650 660 fj1904 ELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTARALLDR ::::::::::::::::::::.:::::.::::::.:::::::::::::::::::::::::: gi|505 ELAPRSAEPGYLVTKVVAVDKDSGQNSWLSYRLIKASEPGLFSVGLHTGEVRTARALLDR 580 590 600 610 620 630 670 680 690 700 710 720 fj1904 DALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDILADLGSLEPSAKPNDSDLTLYLVV ::::::::::::::::::::::::::.:::: :::::.:: :.. :.:..::::::::: gi|505 DALKQSLVVAVQDHGQPPLSATVTLTIAVADSIPDILGDLESIHTPANPKNSDLTLYLVV 640 650 660 670 680 690 730 740 750 760 770 780 fj1904 AVAAVSCVFLAFVIVLLALRLRRWHKSRLLQASGGGLASTPGSHFVGADGVRAFLQTYSH :::::::.:::::::::::::::::.::::::::.:::. :.:::::.:::.:::::::. gi|505 AVAAVSCIFLAFVIVLLALRLRRWHSSRLLQASGNGLAGIPASHFVGVDGVQAFLQTYSQ 700 710 720 730 740 750 790 800 810 820 830 840 fj1904 EVSLTADSRKSHLIFPQPNYADTLISQESCEKSEPLLITQDLLEMKGDSNLLQQAPPNTD :::::: ::::::::::::::::::::::: :::::.: ::::: . : .: .::::::: gi|505 EVSLTAGSRKSHLIFPQPNYADTLISQESCGKSEPLIIPQDLLETQEDPELPEQAPPNTD 760 770 780 790 800 810 850 860 870 880 890 900 fj1904 WRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGL ::::::::::::::::::.:::::::::::::::::::::::::::::::::::.::::: gi|505 WRFSQAQRPGTSGSQNGDETGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGTGTMGL 820 830 840 850 860 870 910 920 930 940 950 960 fj1904 SARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|505 SARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 880 890 900 910 920 >>gi|5457068|gb|AAD43770.1|AF152510_1 protocadherin gamm (829 aa) initn: 5187 init1: 5187 opt: 5187 Z-score: 5885.5 bits: 1100.2 E(): 0 Smith-Waterman score: 5187; 99.876% identity (99.876% similar) in 808 aa overlap (30-837:1-808) 10 20 30 40 50 60 fj1904 KTSFLEKIRLESVVGNWNRIQRKRFTEKEMTNCLSFRNGRGLALLCALLGTLCETGSGQI ::::::::::::::::::::::::::::::: gi|545 MTNCLSFRNGRGLALLCALLGTLCETGSGQI 10 20 30 70 80 90 100 110 120 fj1904 RYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSRGRTQLFSLNSQSGSLVTAERID ::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::: gi|545 RYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSRGRTQLFSLNPQSGSLVTAERID 40 50 60 70 80 90 130 140 150 160 170 180 fj1904 REELCAQIPLCLVKINILVEDKLKIFEVEIEIKDINDNAPNFPTEELEIKIGELTVPGTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|545 REELCAQIPLCLVKINILVEDKLKIFEVEIEIKDINDNAPNFPTEELEIKIGELTVPGTR 100 110 120 130 140 150 190 200 210 220 230 240 fj1904 FPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGAKYPELVLERALDREKKEIHQLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|545 FPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGAKYPELVLERALDREKKEIHQLV 160 170 180 190 200 210 250 260 270 280 290 300 fj1904 LVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRVSVWENVPVGTRLLTVNATDPDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|545 LVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRVSVWENVPVGTRLLTVNATDPDE 220 230 240 250 260 270 310 320 330 340 350 360 fj1904 GFNAQVSYILDKMPGKIAEIFHLNSVSGEVSILKSLDYEDAMFYEIKIEAQDGPGLLSRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|545 GFNAQVSYILDKMPGKIAEIFHLNSVSGEVSILKSLDYEDAMFYEIKIEAQDGPGLLSRA 280 290 300 310 320 330 370 380 390 400 410 420 fj1904 KILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIALIDVHDRDSGQNGQVEVFVLGNLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|545 KILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIALIDVHDRDSGQNGQVEVFVLGNLP 340 350 360 370 380 390 430 440 450 460 470 480 fj1904 FKLEKSIDQYYRLVTATSLDREQISEYNISLRASDGGSPPLSTETHITLHVIDINDNPPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|545 FKLEKSIDQYYRLVTATSLDREQISEYNISLRASDGGSPPLSTETHITLHVIDINDNPPT 400 410 420 430 440 450 490 500 510 520 530 540 fj1904 FPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARITYALTEDTLQGAPLSSFVSINSNT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|545 FPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARITYALTEDTLQGAPLSSFVSINSNT 460 470 480 490 500 510 550 560 570 580 590 600 fj1904 GVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLNLFVLDQNDNAPEILYPALPTDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|545 GVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLNLFVLDQNDNAPEILYPALPTDG 520 530 540 550 560 570 610 620 630 640 650 660 fj1904 STGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTARA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|545 STGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTARA 580 590 600 610 620 630 670 680 690 700 710 720 fj1904 LLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDILADLGSLEPSAKPNDSDLTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|545 LLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDILADLGSLEPSAKPNDSDLTL 640 650 660 670 680 690 730 740 750 760 770 780 fj1904 YLVVAVAAVSCVFLAFVIVLLALRLRRWHKSRLLQASGGGLASTPGSHFVGADGVRAFLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|545 YLVVAVAAVSCVFLAFVIVLLALRLRRWHKSRLLQASGGGLASTPGSHFVGADGVRAFLQ 700 710 720 730 740 750 790 800 810 820 830 840 fj1904 TYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKSEPLLITQDLLEMKGDSNLLQQAP ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|545 TYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKSEPLLITQDLLEMKGDSNLLQVSL 760 770 780 790 800 810 850 860 870 880 890 900 fj1904 PNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAG gi|545 FISLIIKNKYENVVIIKL 820 >>gi|13876332|gb|AAK26086.1| protocadherin gamma A3 [Mus (928 aa) initn: 3941 init1: 3941 opt: 5186 Z-score: 5883.7 bits: 1100.0 E(): 0 Smith-Waterman score: 5186; 85.437% identity (94.822% similar) in 927 aa overlap (37-961:3-928) 10 20 30 40 50 60 fj1904 KIRLESVVGNWNRIQRKRFTEKEMTNCLSFRNGRGLA--LLCALLGTLCETGSGQIRYSV : :.: : :::::::::: .: :::::: gi|138 MIRLGQGTAGALLCALLGTLCAAGFRQIRYSV 10 20 30 70 80 90 100 110 120 fj1904 SEELDKGSFVGNIANDLGLEPRELAERGVRIVSRGRTQLFSLNSQSGSLVTAERIDREEL ::::::::::::..::::::::::::::::.:::..:::::. .:::::: ::::::: gi|138 PEELDKGSFVGNISKDLGLEPRELAERGVRIISRGKSQLFSLDPRSGSLVTRGRIDREEL 40 50 60 70 80 90 130 140 150 160 170 180 fj1904 CAQIPLCLVKINILVEDKLKIFEVEIEIKDINDNAPNFPTEELEIKIGELTVPGTRFPIK ::: :::..::::::::::::::..:.:::::::.:::::::::::::::::::::.: gi|138 CAQSAPCLVSFNILVEDKLKIFEVEVDISDINDNAPSFPTEELEIKIGELTVPGTRFPLK 100 110 120 130 140 150 190 200 210 220 230 240 fj1904 TAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGAKYPELVLERALDREKKEIHQLVLVAS ::::::::.:.::::::. ::::::::::: . ::::::::::::::::: .::: :.:: gi|138 TAFDPDVGMNALQNYKLNSNDYFSLAVNSVIDDAKYPELVLERALDREKKAVHQLDLIAS 160 170 180 190 200 210 250 260 270 280 290 300 fj1904 DGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRVSVWENVPVGTRLLTVNATDPDEGFNA :::::::...: ::::: :::::::.::.:::.::: :::::::::.::::::::::::: gi|138 DGGDPVHTSKLCIQVIVSDANDNPPVFTKPEYHVSVLENVPVGTRLITVNATDPDEGFNA 220 230 240 250 260 270 310 320 330 340 350 360 fj1904 QVSYILDKMPGKIAEIFHLNSVSGEVSILKSLDYEDAMFYEIKIEAQDGPGLLSRAKILV ::::::::::::::..::::::.:..:::::::::::.::::::::::::::.::::.:: gi|138 QVSYILDKMPGKIAQVFHLNSVTGDISILKSLDYEDAVFYEIKIEAQDGPGLFSRAKVLV 280 290 300 310 320 330 370 380 390 400 410 420 fj1904 TVLDVNDNAPEITITSLTSSVPEEGTVGREIALIDVHDRDSGQNGQVEVFVLGNLPFKLE :::::::::::...::::.:::::. .:::::::.:::::::::::: ::::::::: :: gi|138 TVLDVNDNAPEVSVTSLTGSVPEEAPAGREIALINVHDRDSGQNGQVTVFVLGNLPFTLE 340 350 360 370 380 390 430 440 450 460 470 480 fj1904 KSIDQYYRLVTATSLDREQISEYNISLRASDGGSPPLSTETHITLHVIDINDNPPTFPHL :::::::::::: :::.:..:.:::::::.::::::::::::::::: ::::::::: : gi|138 KSIDQYYRLVTARSLDHEEVSQYNISLRATDGGSPPLSTETHITLHVSDINDNPPTFTHA 400 410 420 430 440 450 490 500 510 520 530 540 fj1904 SYSAYIPENNPRGASIFSVTAQDPDSNNNARITYALTEDTLQGAPLSSFVSINSNTGVLY :::::::::: ::::::::::::::...::..::.:.:::::: ::::..:::::::::: gi|138 SYSAYIPENNARGASIFSVTAQDPDTDKNAQVTYSLAEDTLQGLPLSSYISINSNTGVLY 460 470 480 490 500 510 550 560 570 580 590 600 fj1904 ALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLNLFVLDQNDNAPEILYPALPTDGSTGV :: ::::::::::.: .:: :::.::::::..:::::::::::.::::::.::.:::::: gi|138 ALCSFDYEQFRDLQLQITARDSGTPPLSSNTTLNLFVLDQNDNTPEILYPTLPVDGSTGV 520 530 540 550 560 570 610 620 630 640 650 660 fj1904 ELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTARALLDR :::::::.::::::::::::.::::::::::::::::::::::::::::::::::::::: gi|138 ELAPRSADPGYLVTKVVAVDKDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTARALLDR 580 590 600 610 620 630 670 680 690 700 710 720 fj1904 DALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDILADLGSLEPSAKPNDSDLTLYLVV ::::::::::::::::::::::::::.:::: :::::.:: :.. :.:..::::::::: gi|138 DALKQSLVVAVQDHGQPPLSATVTLTIAVADSIPDILGDLESIHTPANPQNSDLTLYLVV 640 650 660 670 680 690 730 740 750 760 770 780 fj1904 AVAAVSCVFLAFVIVLLALRLRRWHKSRLLQASGGGLASTPGSHFVGADGVRAFLQTYSH :::.:::.::::::::::::::::..::: ::::.:::. :.::::: :::.:::::::. gi|138 AVAVVSCIFLAFVIVLLALRLRRWYSSRL-QASGNGLAGIPASHFVGLDGVQAFLQTYSQ 700 710 720 730 740 750 790 800 810 820 830 840 fj1904 EVSLTADSRKSHLIFPQPNYADTLISQESCEKSEPLLITQDLLEMKGDSNLLQQAPPNTD :::::: ::::::::::::::::::::::: :::::.: ::::: : : .: :::::::: gi|138 EVSLTAGSRKSHLIFPQPNYADTLISQESCGKSEPLIIPQDLLETKEDPTLPQQAPPNTD 760 770 780 790 800 810 850 860 870 880 890 900 fj1904 WRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGL ::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::: gi|138 WRFSQAQRPGTSGSQNGDETGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGL 820 830 840 850 860 870 910 920 930 940 950 960 fj1904 SARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|138 SARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 880 890 900 910 920 >>gi|62510871|sp|Q5DRB8.1|PCDG2_PANTR Protocadherin gamm (932 aa) initn: 4743 init1: 4743 opt: 4743 Z-score: 5380.5 bits: 1006.9 E(): 0 Smith-Waterman score: 4743; 79.284% identity (91.540% similar) in 922 aa overlap (40-961:11-932) 10 20 30 40 50 60 fj1904 LESVVGNWNRIQRKRFTEKEMTNCLSFRNGRGLALLCALLGTLCETGSGQIRYSVSEELD : : ::: ::.:: :. .::::::: ::.: gi|625 MAALQKLPHCRKLFLLCFLLATLWEARAGQIRYSVREEID 10 20 30 40 70 80 90 100 110 120 fj1904 KGSFVGNIANDLGLEPRELAERGVRIVSRGRTQLFSLNSQSGSLVTAERIDREELCAQIP .::::::::.:::::: :::.:::::::::.:::.:: .:::::::.:::::::::: gi|625 RGSFVGNIAKDLGLEPLALAEQGVRIVSRGRSQLFALNPRSGSLVTANRIDREELCAQSA 50 60 70 80 90 100 130 140 150 160 170 180 fj1904 LCLVKINILVEDKLKIFEVEIEIKDINDNAPNFPTEELEIKIGELTVPGTRFPIKTAFDP ::...:::.:::: :. ::.:: ::::::: : .::::.::.: :.:: :.:.:.: : gi|625 PCLLNFNILLEDKLTIYSVEVEITDINDNAPRFGVEELELKISETTTPGFRIPLKNAHDA 110 120 130 140 150 160 190 200 210 220 230 240 fj1904 DVGINSLQNYKLSPNDYFSLAVNSVSEGAKYPELVLERALDREKKEIHQLVLVASDGGDP ::: :.::.: :.:::.::: : : ..: ::::::::::::::.. .:.::::::::::: gi|625 DVGENALQKYALNPNDHFSLDVRSGADGNKYPELVLERALDREEEAVHHLVLVASDGGDP 170 180 190 200 210 220 250 260 270 280 290 300 fj1904 VHSGNLHIQVIVLDANDNPPMFTQPEYRVSVWENVPVGTRLLTVNATDPDEGFNAQVSYI : ::. .: : ::::::: :.:::::::.:. ::.:::::.:::.::: :::. ::: :. gi|625 VLSGTSRICVKVLDANDNAPVFTQPEYRISIPENTPVGTRILTVTATDADEGYYAQVVYF 230 240 250 260 270 280 310 320 330 340 350 360 fj1904 LDKMPGKIAEIFHLNSVSGEVSILKSLDYEDAMFYEIKIEAQDGPGLLSRAKILVTVLDV :.: ::. .:.:.:.:.:::..:.:.:::::: :.:: ::::::::::.:::..:::::: gi|625 LEKSPGETSEVFELKSTSGELTIIKDLDYEDATFHEIDIEAQDGPGLLTRAKVIVTVLDV 290 300 310 320 330 340 370 380 390 400 410 420 fj1904 NDNAPEITITSLTSSVPEEGTVGREIALIDVHDRDSGQNGQVEVFVLGNLPFKLEKSIDQ ::::::. .:: :::: :.. : :.:..:::::::::. . . :::::::::.:. gi|625 NDNAPEFYMTSATSSVSEDSLPGTIIGLFNVHDRDSGQNAFTTCSLPENLPFKLEKSVDN 350 360 370 380 390 400 430 440 450 460 470 480 fj1904 YYRLVTATSLDREQISEYNISLRASDGGSPPLSTETHITLHVIDINDNPPTFPHLSYSAY ::::::. .:::::.: :::.: :.:::.: :::..:: :.: ::::: :.: . :::.: gi|625 YYRLVTTRALDREQFSFYNITLTAKDGGNPSLSTDAHILLQVADINDNAPAFSRTSYSTY 410 420 430 440 450 460 490 500 510 520 530 540 fj1904 IPENNPRGASIFSVTAQDPDSNNNARITYALTEDTLQGAPLSSFVSINSNTGVLYALRSF ::::::::::.:::::.:::::.::..::...:::.:::::::..::::.:::::::::: gi|625 IPENNPRGASVFSVTAHDPDSNDNAHVTYSFVEDTVQGAPLSSYISINSDTGVLYALRSF 470 480 490 500 510 520 550 560 570 580 590 600 fj1904 DYEQFRDLKLLVTASDSGNPPLSSNVSLNLFVLDQNDNAPEILYPALPTDGSTGVELAPR ::::.:::.. : : :::::::::::::.::::::::: :::::::.::::::::::::: gi|625 DYEQLRDLQVWVIARDSGNPPLSSNVSLSLFVLDQNDNPPEILYPAFPTDGSTGVELAPR 530 540 550 560 570 580 610 620 630 640 650 660 fj1904 SAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTARALLDRDALKQ ::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::: gi|625 SAEPGYLVTKVVAVDRDSGQNAWLSYHLLKASEPGLFSVGLHTGEVRTARALLDRDALKQ 590 600 610 620 630 640 670 680 690 700 710 720 fj1904 SLVVAVQDHGQPPLSATVTLTVAVADRIPDILADLGSLEPSAKPNDSDLTLYLVVAVAAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 SLVVAVQDHGQPPLSATVTLTVAVADRIPDILADLGSLEPSAKPNDSDLTLYLVVAVAAV 650 660 670 680 690 700 730 740 750 760 770 780 fj1904 SCVFLAFVIVLLALRLRRWHKSRLLQASGGGLASTPGSHFVGADGVRAFLQTYSHEVSLT ::::::::::::: ::::::::::::::::.:.. .:::::.::::::::::::::::: gi|625 SCVFLAFVIVLLAHRLRRWHKSRLLQASGGSLTGMQSSHFVGVDGVRAFLQTYSHEVSLT 710 720 730 740 750 760 790 800 810 820 830 840 fj1904 ADSRKSHLIFPQPNYADTLISQESCEKSEPLLITQDLLEMKGDSNLLQQAPPNTDWRFSQ :::::::::::::::::::::::::::.. : :.::: . . .. ::::::::::::: gi|625 ADSRKSHLIFPQPNYADTLISQESCEKKDFLSAPQSLLEEEREETFSQQAPPNTDWRFSQ 770 780 790 800 810 820 850 860 870 880 890 900 fj1904 AQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 AQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYG 830 840 850 860 870 880 910 920 930 940 950 960 fj1904 PQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 PQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 890 900 910 920 930 >>gi|37999841|sp|Q9Y5H1.1|PCDG2_HUMAN Protocadherin gamm (932 aa) initn: 4713 init1: 4713 opt: 4713 Z-score: 5346.4 bits: 1000.6 E(): 0 Smith-Waterman score: 4713; 78.742% identity (91.432% similar) in 922 aa overlap (40-961:11-932) 10 20 30 40 50 60 fj1904 LESVVGNWNRIQRKRFTEKEMTNCLSFRNGRGLALLCALLGTLCETGSGQIRYSVSEELD : :.::: ::.:: :. .::::::: ::.: gi|379 MAALQKLPHCRKLVLLCFLLATLWEARAGQIRYSVREEID 10 20 30 40 70 80 90 100 110 120 fj1904 KGSFVGNIANDLGLEPRELAERGVRIVSRGRTQLFSLNSQSGSLVTAERIDREELCAQIP .::::::::.:::::: :::.:::::::::.:::.:: .:::::::.:::::::::: gi|379 RGSFVGNIAKDLGLEPLALAEQGVRIVSRGRSQLFALNPRSGSLVTANRIDREELCAQSA 50 60 70 80 90 100 130 140 150 160 170 180 fj1904 LCLVKINILVEDKLKIFEVEIEIKDINDNAPNFPTEELEIKIGELTVPGTRFPIKTAFDP ::...:::.:::: :. ::.:: ::::::: : .::::.::.: :.:: :.:.:.: : gi|379 PCLLNFNILLEDKLTIYSVEVEITDINDNAPRFGVEELELKISETTTPGFRIPLKNAHDA 110 120 130 140 150 160 190 200 210 220 230 240 fj1904 DVGINSLQNYKLSPNDYFSLAVNSVSEGAKYPELVLERALDREKKEIHQLVLVASDGGDP ::: :.::.: :.:::.::: : ..: :::::::::.::::.. .:.::::::::::: gi|379 DVGENALQKYALNPNDHFSLDVRRGADGNKYPELVLERSLDREEEAVHHLVLVASDGGDP 170 180 190 200 210 220 250 260 270 280 290 300 fj1904 VHSGNLHIQVIVLDANDNPPMFTQPEYRVSVWENVPVGTRLLTVNATDPDEGFNAQVSYI : ::. .: : ::::::: :.:::::::.:. ::. ::::.:::.::: :::. ::: :. gi|379 VLSGTSRICVKVLDANDNAPVFTQPEYRISIPENTLVGTRILTVTATDADEGYYAQVVYF 230 240 250 260 270 280 310 320 330 340 350 360 fj1904 LDKMPGKIAEIFHLNSVSGEVSILKSLDYEDAMFYEIKIEAQDGPGLLSRAKILVTVLDV :.: ::. .:.:.:.:.:::..:.:.:::::: :.:: ::::::::::.:::..:::::: gi|379 LEKSPGETSEVFELKSTSGELTIIKDLDYEDATFHEIDIEAQDGPGLLTRAKVIVTVLDV 290 300 310 320 330 340 370 380 390 400 410 420 fj1904 NDNAPEITITSLTSSVPEEGTVGREIALIDVHDRDSGQNGQVEVFVLGNLPFKLEKSIDQ ::::::. .:: :::: :.. : :.:..:::::::::. . . .::::::::.:. gi|379 NDNAPEFYMTSATSSVSEDSLPGTIIGLFNVHDRDSGQNAFTTCSLPEDLPFKLEKSVDN 350 360 370 380 390 400 430 440 450 460 470 480 fj1904 YYRLVTATSLDREQISEYNISLRASDGGSPPLSTETHITLHVIDINDNPPTFPHLSYSAY ::::::. .:::::.: :::.: :.:::.: :::..:: :.: ::::: :.: . :::.: gi|379 YYRLVTTRALDREQFSFYNITLTAKDGGNPSLSTDAHILLQVADINDNAPAFSRTSYSTY 410 420 430 440 450 460 490 500 510 520 530 540 fj1904 IPENNPRGASIFSVTAQDPDSNNNARITYALTEDTLQGAPLSSFVSINSNTGVLYALRSF ::::::::::.:::::.:::::.::..::...:::.:::::::..::::.:::::::::: gi|379 IPENNPRGASVFSVTAHDPDSNDNAHVTYSFAEDTVQGAPLSSYISINSDTGVLYALRSF 470 480 490 500 510 520 550 560 570 580 590 600 fj1904 DYEQFRDLKLLVTASDSGNPPLSSNVSLNLFVLDQNDNAPEILYPALPTDGSTGVELAPR ::::.:::.. : : :::::::::::::.:::::::::::::::::.::::::::::::: gi|379 DYEQLRDLQVWVIARDSGNPPLSSNVSLSLFVLDQNDNAPEILYPAFPTDGSTGVELAPR 530 540 550 560 570 580 610 620 630 640 650 660 fj1904 SAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTARALLDRDALKQ ::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::: gi|379 SAEPGYLVTKVVAVDRDSGQNAWLSYHLLKASEPGLFSVGLHTGEVRTARALLDRDALKQ 590 600 610 620 630 640 670 680 690 700 710 720 fj1904 SLVVAVQDHGQPPLSATVTLTVAVADRIPDILADLGSLEPSAKPNDSDLTLYLVVAVAAV :::::.:::::::::::::::::::::::::::::::::::: ::::::::::::::::: gi|379 SLVVAIQDHGQPPLSATVTLTVAVADRIPDILADLGSLEPSAIPNDSDLTLYLVVAVAAV 650 660 670 680 690 700 730 740 750 760 770 780 fj1904 SCVFLAFVIVLLALRLRRWHKSRLLQASGGGLASTPGSHFVGADGVRAFLQTYSHEVSLT ::::::::::::: ::::::::::::::::.:.. .:::::.::::::::::::::::: gi|379 SCVFLAFVIVLLAHRLRRWHKSRLLQASGGSLTGMQSSHFVGVDGVRAFLQTYSHEVSLT 710 720 730 740 750 760 790 800 810 820 830 840 fj1904 ADSRKSHLIFPQPNYADTLISQESCEKSEPLLITQDLLEMKGDSNLLQQAPPNTDWRFSQ :::::::::::::::::::::::::::.. : :.::: . . .. ::::::::::::: gi|379 ADSRKSHLIFPQPNYADTLISQESCEKKDFLSAPQSLLEEEREETFSQQAPPNTDWRFSQ 770 780 790 800 810 820 850 860 870 880 890 900 fj1904 AQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 AQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYG 830 840 850 860 870 880 910 920 930 940 950 960 fj1904 PQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|379 PQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 890 900 910 920 930 >>gi|62510869|sp|Q5DRB6.1|PCDG4_PANTR Protocadherin gamm (931 aa) initn: 3870 init1: 3870 opt: 4694 Z-score: 5324.8 bits: 996.6 E(): 0 Smith-Waterman score: 4694; 77.972% identity (91.276% similar) in 917 aa overlap (45-961:16-931) 20 30 40 50 60 70 fj1904 GNWNRIQRKRFTEKEMTNCLSFRNGRGLALLCALLGTLCETGSGQIRYSVSEELDKGSFV .: :::.: : . :::::: :: ..:: : gi|625 MAAPPARPDHTRLLHICLLLGVLVEIRAEQIRYSVFEEQEEGSVV 10 20 30 40 80 90 100 110 120 130 fj1904 GNIANDLGLEPRELAERGVRIVSRGRTQLFSLNSQSGSLVTAERIDREELCAQIPLCLVK ::::.:::: ::::::::::::::::::::.:: .::.:::: :::::::: . : :... gi|625 GNIAKDLGLAPRELAERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTN 50 60 70 80 90 100 140 150 160 170 180 190 fj1904 INILVEDKLKIFEVEIEIKDINDNAPNFPTEELEIKIGELTVPGTRFPIKTAFDPDVGIN ..::.:: .::..::.:: :.::: :.: ::. :::..: ::::::. :::::::.: gi|625 LEILLEDTVKILRVEVEIIDVNDNPPSFGTEQREIKVAENENPGTRFPLPEAFDPDVGVN 110 120 130 140 150 160 200 210 220 230 240 250 fj1904 SLQNYKLSPNDYFSLAVNSVSEGAKYPELVLERALDREKKEIHQLVLVASDGGDPVHSGN :::.:.:. : :::: :.: ..: ::::::::::::::.. .:.:::.: ::::::.::. gi|625 SLQGYQLNSNGYFSLDVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGT 170 180 190 200 210 220 260 270 280 290 300 310 fj1904 LHIQVIVLDANDNPPMFTQPEYRVSVWENVPVGTRLLTVNATDPDEGFNAQVSYILDKMP .: .:..:.::: :.::::::.::: ::::::: ::::.::::::: :..:.: . :. gi|625 ARILIILVDTNDNAPVFTQPEYHVSVHENVPVGTLLLTVKATDPDEGANGDVTYSFRKVR 230 240 250 260 270 280 320 330 340 350 360 370 fj1904 GKIAEIFHLNSVSGEVSILKSLDYEDAMFYEIKIEAQDGPGLLSRAKILVTVLDVNDNAP ::...:.:::.::...:: .:::::. ::.: .::.::::: .:.:.:::::: ::::: gi|625 DKISQLFQLNSLSGDITILGDLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAP 290 300 310 320 330 340 380 390 400 410 420 430 fj1904 EITITSLTSSVPEEGTVGREIALIDVHDRDSGQNGQVEVFVLGNLPFKLEKSIDQYYRLV :.:.::::::: : .. : :::..::: ::: :: : . :::: :::. .::::. gi|625 EVTVTSLTSSVQETSSPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLL 350 360 370 380 390 400 440 450 460 470 480 490 fj1904 TATSLDREQISEYNISLRASDGGSPPLSTETHITLHVIDINDNPPTFPHLSYSAYIPENN : .::::..:::::.. :.: :.:::::::::.:.:.::::::::::: :::::.:::: gi|625 THRTLDREEVSEYNITVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYVPENN 410 420 430 440 450 460 500 510 520 530 540 550 fj1904 PRGASIFSVTAQDPDSNNNARITYALTEDTLQGAPLSSFVSINSNTGVLYALRSFDYEQF ::::::.:.:::::::..::::::.:.:::.:::::::.::::::::.:::::::::::: gi|625 PRGASILSMTAQDPDSGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALRSFDYEQF 470 480 490 500 510 520 560 570 580 590 600 610 fj1904 RDLKLLVTASDSGNPPLSSNVSLNLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPG :::.:::::::::.:::::::::.:::::::::.::::::..::: :::::::::::. : gi|625 RDLQLLVTASDSGDPPLSSNVSLSLFVLDQNDNVPEILYPTFPTDDSTGVELAPRSADSG 530 540 550 560 570 580 620 630 640 650 660 670 fj1904 YLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVA :::::::::::::::::::::::::.::::::.::::::::::::::::::::::::::. gi|625 YLVTKVVAVDRDSGQNAWLSYRLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQSLVVV 590 600 610 620 630 640 680 690 700 710 720 730 fj1904 VQDHGQPPLSATVTLTVAVADRIPDILADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFL ::::::::::::::::::::: :::.:::::::.::: :.:: :::::::.::::::::: gi|625 VQDHGQPPLSATVTLTVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVSVAAVSCVFL 650 660 670 680 690 700 740 750 760 770 780 790 fj1904 AFVIVLLALRLRRWHKSRLLQASGGGLASTPGSHFVGADGVRAFLQTYSHEVSLTADSRK ::: :::::.::::::::::.: :. :...:.:::::.:::::::::::::::::::::: gi|625 AFVTVLLALKLRRWHKSRLLHAEGSRLSGVPASHFVGVDGVRAFLQTYSHEVSLTADSRK 710 720 730 740 750 760 800 810 820 830 840 850 fj1904 SHLIFPQPNYADTLISQESCEKSEPLLITQDLLEMKGDSNLLQQAPPNTDWRFSQAQRPG ::::: ::.::::::: ::::::::::::::::: ::: :: :::::::::::::::::: gi|625 SHLIFSQPSYADTLISLESCEKSEPLLITQDLLETKGDPNL-QQAPPNTDWRFSQAQRPG 770 780 790 800 810 820 860 870 880 890 900 910 fj1904 TSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|625 TSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTL 830 840 850 860 870 880 920 930 940 950 960 fj1904 QHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK ::::::::::::::::::::::::::::::::::::::::::::::: gi|625 QHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 890 900 910 920 930 961 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Sun Aug 10 19:38:17 2008 done: Sun Aug 10 19:40:22 2008 Total Scan time: 1071.810 Total Display time: 0.550 Function used was FASTA [version 34.26.5 April 26, 2007]