hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-19402396/chunk_1/iprscan-20080810-19402396.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj19046 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00028.8.fs Cadherin domain 297.8 1.8e-86 6 PF00028.8.ls Cadherin domain 292.5 7.2e-85 5 PF08266.2.fs Cadherin-like 180.4 2.2e-52 1 PF08266.2.ls Cadherin-like 182.4 1.1e-51 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08266.2.ls 1/1 58 141 .. 1 84 [] 182.4 1.1e-51 PF08266.2.fs 1/1 58 141 .. 1 84 [] 180.4 2.2e-52 PF00028.8.fs 2/6 167 262 .. 1 107 [] 26.9 4.2e-07 PF00028.8.ls 1/5 167 262 .. 1 107 [] 28.8 1.8e-05 PF00028.8.fs 3/6 276 367 .. 1 107 [] 69.5 2.6e-19 PF00028.8.ls 2/5 276 367 .. 1 107 [] 71.3 2.9e-18 PF00028.8.fs 4/6 381 472 .. 1 107 [] 63.3 1.6e-17 PF00028.8.ls 3/5 381 472 .. 1 107 [] 65.1 2.1e-16 PF00028.8.ls 4/5 486 582 .. 1 107 [] 77.2 4.8e-20 PF00028.8.fs 5/6 486 582 .. 1 107 [] 75.4 5.4e-21 PF00028.8.ls 5/5 604 694 .. 1 107 [] 50.1 6.7e-12 PF00028.8.fs 6/6 611 694 .. 9 107 .] 54.5 5.3e-15 Alignments of top-scoring domains: PF08266.2.ls: domain 1 of 1, from 58 to 141: score 182.4, E = 1.1e-51 *->gqirYSVpEEterGsfVGNlAKDLGLdvqeLaaRgaRivSggnkqyF gqirYSV+EE+++GsfVGN+A DLGL+++eLa+Rg+RivS+g++q+F fj19046 58 GQIRYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSRGRTQLF 104 qlnletGdLlvnERiDREeLCgqsepCvLhlevllEn<-* +ln+++G+L+++ERiDREeLC+q++ C++ ++l+E+ fj19046 105 SLNSQSGSLVTAERIDREELCAQIPLCLVKINILVED 141 PF08266.2.fs: domain 1 of 1, from 58 to 141: score 180.4, E = 2.2e-52 *->gqirYSVpEEterGsfVGNlAKDLGLdvqeLaaRgaRivSggnkqyF gqirYSV+EE+++GsfVGN+A DLGL+++eLa+Rg+RivS+g++q+F fj19046 58 GQIRYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSRGRTQLF 104 qlnletGdLlvnERiDREeLCgqsepCvLhlevllEn<-* +ln+++G+L+++ERiDREeLC+q++ C++ ++l+E+ fj19046 105 SLNSQSGSLVTAERIDREELCAQIPLCLVKINILVED 141 PF00028.8.fs: domain 2 of 6, from 167 to 262: score 26.9, E = 4.2e-07 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr ++ + E +++Gt+ tA D+D g N+ Y++++++ F+ fj19046 167 LEIKIGELTVPGTRFPIKTAFDPD--VGINSLQNYKLSPND---YFS 208 IdpdtGdnegi....isttkpLDREeifngeYeLtveAtDadpllasggg + ++ + eg++ +++ + + LDRE+ +++ L+++A+D+ g fj19046 209 LAVNSVS-EGAkypeLVLERALDREKK--EIHQLVLVASDG-------GD 248 pplsstatvtitVl<-* p s+ + + Vl fj19046 249 PVHSGNLHIQVIVL 262 PF00028.8.ls: domain 1 of 5, from 167 to 262: score 28.8, E = 1.8e-05 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr ++ + E +++Gt+ tA D+D g N+ Y++++++ F+ fj19046 167 LEIKIGELTVPGTRFPIKTAFDPD--VGINSLQNYKLSPND---YFS 208 IdpdtGdnegi....isttkpLDREeifngeYeLtveAtDadpllasggg + ++ + eg++ +++ + + LDRE+ +++ L+++A+D+ g fj19046 209 LAVNSVS-EGAkypeLVLERALDREKK--EIHQLVLVASDG-------GD 248 pplsstatvtitVl<-* p s+ + + Vl fj19046 249 PVHSGNLHIQVIVL 262 PF00028.8.fs: domain 3 of 6, from 276 to 367: score 69.5, E = 2.6e-19 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..ggw y +sv En+pvGt++ltv+AtD+D +g N++++Y + + + + + + fj19046 276 YRVSVWENVPVGTRLLTVNATDPD--EGFNAQVSYILDKMPGkiAEI 320 FrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggpp F++++ +G+ +s+ k+LD+E Ye+ +eA+D+ p+ fj19046 321 FHLNSVSGE----VSILKSLDYEDA--MFYEIKIEAQDG---------PG 355 lsstatvtitVl<-* l s+a + +tVl fj19046 356 LLSRAKILVTVL 367 PF00028.8.ls: domain 2 of 5, from 276 to 367: score 71.3, E = 2.9e-18 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..ggw y +sv En+pvGt++ltv+AtD+D +g N++++Y + + + + + + fj19046 276 YRVSVWENVPVGTRLLTVNATDPD--EGFNAQVSYILDKMPGkiAEI 320 FrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggpp F++++ +G+ +s+ k+LD+E Ye+ +eA+D+ p+ fj19046 321 FHLNSVSGE----VSILKSLDYEDA--MFYEIKIEAQDG---------PG 355 lsstatvtitVl<-* l s+a + +tVl fj19046 356 LLSRAKILVTVL 367 PF00028.8.fs: domain 4 of 6, from 381 to 472: score 63.3, E = 1.6e-17 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr + svpE vG e++ + ++D+D +g+Ng++ + lg+ p F+ fj19046 381 LTSSVPEEGTVGREIALIDVHDRD--SGQNGQVEVFVLGNLP---FK 422 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls +++ + + + t+ +LDRE+i +eY+++++A+D+ g+ppls fj19046 423 LEKSIDQYYR-LVTATSLDREQI--SEYNISLRASDG-------GSPPLS 462 statvtitVl<-* +++ +t +V+ fj19046 463 TETHITLHVI 472 PF00028.8.ls: domain 3 of 5, from 381 to 472: score 65.1, E = 2.1e-16 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr + svpE vG e++ + ++D+D +g+Ng++ + lg+ p F+ fj19046 381 LTSSVPEEGTVGREIALIDVHDRD--SGQNGQVEVFVLGNLP---FK 422 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls +++ + + + t+ +LDRE+i +eY+++++A+D+ g+ppls fj19046 423 LEKSIDQYYR-LVTATSLDREQI--SEYNISLRASDG-------GSPPLS 462 statvtitVl<-* +++ +t +V+ fj19046 463 TETHITLHVI 472 PF00028.8.ls: domain 4 of 5, from 486 to 582: score 77.2, E = 4.8e-20 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..... ysa +pEn p+G ++ +vtA+D+D + N+ri+Y+++++ ++ + fj19046 486 YSAYIPENNPRGASIFSVTAQDPD--SNNNARITYALTEDTLqgapl 530 ggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgg + +I+++tG+ ++ ++ D+E+ + L v A+D+ g fj19046 531 SSFVSINSNTGV----LYALRSFDYEQF--RDLKLLVTASDS-------G 567 gpplsstatvtitVl<-* pplss ++++ Vl fj19046 568 NPPLSSNVSLNLFVL 582 PF00028.8.fs: domain 5 of 6, from 486 to 582: score 75.4, E = 5.4e-21 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..... ysa +pEn p+G ++ +vtA+D+D + N+ri+Y+++++ ++ + fj19046 486 YSAYIPENNPRGASIFSVTAQDPD--SNNNARITYALTEDTLqgapl 530 ggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgg + +I+++tG+ ++ ++ D+E+ + L v A+D+ g fj19046 531 SSFVSINSNTGV----LYALRSFDYEQF--RDLKLLVTASDS-------G 567 gpplsstatvtitVl<-* pplss ++++ Vl fj19046 568 NPPLSSNVSLNLFVL 582 PF00028.8.ls: domain 5 of 5, from 604 to 694: score 50.1, E = 6.7e-12 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr + + +p G v+ v A+D+D +g+N+ ++Y++l+ +++g F+ fj19046 604 VELAPRSAEP-GYLVTKVVAVDRD--SGQNAWLSYRLLKASEPGLFS 647 IdpdtGdnegiisttkp.LDREeifngeYeLtveAtDadpllasgggppl + +tG+ ++t++ LDR + + +L+v ++D+ g+ppl fj19046 648 VGLHTGE----VRTARAlLDRDAL--KQ-SLVVAVQDH-------GQPPL 683 sstatvtitVl<-* s+t+t+t+ V fj19046 684 SATVTLTVAVA 694 PF00028.8.fs: domain 6 of 6, from 611 to 694: score 54.5, E = 5.3e-15 *->apvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFrIdpdtGdn a +G v+ v A+D+D +g+N+ ++Y++l+ +++g F++ +tG+ fj19046 611 AEPGYLVTKVVAVDRD--SGQNAWLSYRLLKASEPGLFSVGLHTGE- 654 egiisttkp.LDREeifngeYeLtveAtDadpllasgggpplsstatvti ++t++ LDR + + +L+v ++D+ g+ppls+t+t+t+ fj19046 655 ---VRTARAlLDRDAL--KQ-SLVVAVQDH-------GQPPLSATVTLTV 691 tVl<-* V fj19046 692 AVA 694 //