hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-19402396/chunk_1/iprscan-20080810-19402396.nocrc
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Query sequence: fj19046
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00112                                                 445.9     2e-129   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00112    1/6      48   160 ..     1   121 []    21.5    0.018
SM00112    2/6     184   269 ..     1   121 []    74.7  1.2e-17
SM00112    3/6     293   374 ..     1   121 []    93.9  1.9e-23
SM00112    4/6     398   479 ..     1   121 []    92.0    7e-23
SM00112    5/6     503   589 ..     1   121 []    99.2  4.9e-25
SM00112    6/6     620   698 ..     1   121 []    64.6  1.2e-14

Alignments of top-scoring domains:
SM00112: domain 1 of 6, from 48 to 160: score 21.5, E = 0.018
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..................
                      +  t   +g    +g+      ++Ys++++ ++++  ++  ++ + +
     fj19046    48    LLGTLCETG----SGQ------IRYSVSEeldkgsfvgniandlgle 84   

                   ..................lFsIdpetGtngpsLvkleiiitttkpLDREe
                   +++  +++ +  ++++++lFs+++++G            ++t++++DREe
     fj19046    85 prelaergvrivsrgrtqLFSLNSQSG-----------SLVTAERIDREE 123  

                   qflkreqtdeseYtLtveAtDgGgpppgdssptrksqqtpplsstatvtv
                    +        ++  L  +  +                    +    +v +
     fj19046   124 LC--------AQIPLCLVKINILVED---------------KLKIFEVEI 150  

                   tVlDvNDNaP<-*
                   +++D+NDNaP   
     fj19046   151 EIKDINDNAP    160  

SM00112: domain 2 of 6, from 184 to 269: score 74.7, E = 1.2e-17
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils....lFsIdpet.Gtngp
                       +A D+D g    N+         Y +++++    ++++ ++G ++p
     fj19046   184    KTAFDPDVG---INSL------QNYKLSPndyfSLAVNSVSeGAKYP 221  

                   sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss
                          ++++ ++LDRE++         + ++L+ +A+DgG p      
     fj19046   222 -------ELVLERALDREKK---------EIHQLVLVASDGGDPV----- 250  

                   ptrksqqtpplsstatvtvtVlDvNDNaP<-*
                             +s++  ++v+VlD NDN+P   
     fj19046   251 ----------HSGNLHIQVIVLDANDNPP    269  

SM00112: domain 3 of 6, from 293 to 374: score 93.9, E = 1.9e-23
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.......lFsIdpetGtn
                      v+AtD+D+g    N++      v+Y +   +++  + F++++ +G  
     fj19046   293    VNATDPDEG---FNAQ------VSYILDKmpgkiaeIFHLNSVSG-- 328  

                   gpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgd
                            +++++k+LD+E+            Y++++eA+Dg g     
     fj19046   329 ---------EVSILKSLDYEDA---------MFYEIKIEAQDGPG----- 355  

                   ssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                               l s a + vtVlDvNDNaP   
     fj19046   356 ------------LLSRAKILVTVLDVNDNAP    374  

SM00112: domain 4 of 6, from 398 to 479: score 92.0, E = 7e-23
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..lFsIdpetGtngpsLv
                      + ++D+Dsg   +Ng+      v+  +l++ +F+++++  +      
     fj19046   398    IDVHDRDSG---QNGQ------VEVFVLGnlPFKLEKSIDQ------ 429  

                   kleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssptr
                     ++ ++t+ +LDRE++         seY++  +A+DgG+pp        
     fj19046   430 --YYRLVTATSLDREQI---------SEYNISLRASDGGSPP-------- 460  

                   ksqqtpplsstatvtvtVlDvNDNaP<-*
                          ls+++ +t +V+D+NDN+P   
     fj19046   461 -------LSTETHITLHVIDINDNPP    479  

SM00112: domain 5 of 6, from 503 to 589: score 99.2, E = 4.9e-25
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..........lFsIdpet
                      v+A D+Ds    +N++      +tY +++++ ++ + +++ sI+++t
     fj19046   503    VTAQDPDSN---NNAR------ITYALTEdtlqgaplssFVSINSNT 540  

                   GtngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpp
                   G           ++++++++D+E+              L v+A+D+G+pp
     fj19046   541 G-----------VLYALRSFDYEQF---------RDLKLLVTASDSGNPP 570  

                   pgdssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                  lss+++++ +VlD+NDNaP   
     fj19046   571 ---------------LSSNVSLNLFVLDQNDNAP    589  

SM00112: domain 6 of 6, from 620 to 698: score 64.6, E = 1.2e-14
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp
                      v+A+D+Dsg   +N++      ++Y++l  ++++lFs+  +tG    
     fj19046   620    VVAVDRDSG---QNAW------LSYRLLKasepgLFSVGLHTG---- 653  

                   sLvkleiiittt.kpLDREeqflkreqtdeseYtLtveAtDgGgpppgds
                          +++t+++ LDR++          +  +L+v ++D+G+pp    
     fj19046   654 -------EVRTArALLDRDAL---------K-QSLVVAVQDHGQPP---- 682  

                   sptrksqqtpplsstatvtvtVlDvNDNaP<-*
                              ls+t+t+tv V D     P   
     fj19046   683 -----------LSATVTLTVAVAD---RIP    698  

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