hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090914/iprscan-20090914-13315119/chunk_1/iprscan-20090914-13315119.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj19226s1 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02373.13.fs JmjC domain 172.2 1.9e-50 1 PF02373.13.ls JmjC domain 174.2 3e-49 1 PF01388.11.ls ARID/BRIGHT DNA binding domain 164.0 3.4e-46 1 PF01388.11.fs ARID/BRIGHT DNA binding domain 162.1 1.3e-45 1 PF02928.6.ls C5HC2 zinc finger 102.2 1.4e-27 1 PF02928.6.fs C5HC2 zinc finger 100.3 5.3e-27 1 PF02375.7.ls jmjN domain 94.9 2.3e-25 1 PF02375.7.fs jmjN domain 93.1 8e-25 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02375.7.ls 1/1 574 618 .. 1 53 [] 94.9 2.3e-25 PF02375.7.fs 1/1 574 618 .. 1 53 [] 93.1 8e-25 PF01388.11.fs 1/1 634 744 .. 1 116 [] 162.1 1.3e-45 PF01388.11.ls 1/1 634 744 .. 1 116 [] 164.0 3.4e-46 PF02373.13.fs 1/1 932 1047 .. 1 126 [] 172.2 1.9e-50 PF02373.13.ls 1/1 932 1047 .. 1 126 [] 174.2 3e-49 PF02928.6.fs 1/1 1155 1209 .. 1 59 [] 100.3 5.3e-27 PF02928.6.ls 1/1 1155 1209 .. 1 59 [] 102.2 1.4e-27 Alignments of top-scoring domains: PF02375.7.ls: domain 1 of 1, from 574 to 618: score 94.9, E = 2.3e-25 *->PvFkPtmeEFeDplaYIakIHirpgAekyGivKVvPPkeWLELLEGk Pv++P+++EF+Dpl+YI++ +r+++ek+G+++V+PP++W + fj19226s1 574 PVLRPSAKEFHDPLIYIES--VRAQVEKFGMCRVIPPPDW------R 612 Ppcald<-* P+c+l+ fj19226s1 613 PECKLN 618 PF02375.7.fs: domain 1 of 1, from 574 to 618: score 93.1, E = 8e-25 *->PvFkPtmeEFeDplaYIakIHirpgAekyGivKVvPPkeWLELLEGk Pv++P+++EF+Dpl+YI++ +r+++ek+G+++V+PP++W + fj19226s1 574 PVLRPSAKEFHDPLIYIES--VRAQVEKFGMCRVIPPPDW------R 612 Ppcald<-* P+c+l+ fj19226s1 613 PECKLN 618 PF01388.11.fs: domain 1 of 1, from 634 to 744: score 162.1, E = 1.3e-45 *->eaqtrerkeFldrLikFmekrgtpltkiPvvgkkeLDLYrLyrlVke ++++++++++l++++k+++++g++++++P +g++eLDL++++rl++e fj19226s1 634 GRRWGPNVQRLACIKKHLKSQGITMDELPLIGGCELDLACFFRLINE 680 kGGfqqVtkdkkWseiareLgipdsisRGVPSsagslLrshYmryLypfE +GG+qqVt+ kkW+++a++L+ip +++ +++++L+++Y++yL++++ fj19226s1 681 MGGMQQVTDLKKWNKLADMLRIPRTAQ-----DRLAKLQEAYCQYLLSYD 725 cyeeeenlrdeteaaddme<-* + ++ee++r e+e+ +++e fj19226s1 726 SLSPEEHRRLEKEVLMEKE 744 PF01388.11.ls: domain 1 of 1, from 634 to 744: score 164.0, E = 3.4e-46 *->eaqtrerkeFldrLikFmekrgtpltkiPvvgkkeLDLYrLyrlVke ++++++++++l++++k+++++g++++++P +g++eLDL++++rl++e fj19226s1 634 GRRWGPNVQRLACIKKHLKSQGITMDELPLIGGCELDLACFFRLINE 680 kGGfqqVtkdkkWseiareLgipdsisRGVPSsagslLrshYmryLypfE +GG+qqVt+ kkW+++a++L+ip +++ +++++L+++Y++yL++++ fj19226s1 681 MGGMQQVTDLKKWNKLADMLRIPRTAQ-----DRLAKLQEAYCQYLLSYD 725 cyeeeenlrdeteaaddme<-* + ++ee++r e+e+ +++e fj19226s1 726 SLSPEEHRRLEKEVLMEKE 744 PF02373.13.fs: domain 1 of 1, from 932 to 1047: score 172.2, E = 1.9e-50 *->wlYvGmpfSttpwHiEdqglySinylhfgapkvWYgiPseyaekfek wl +Gm fSt +w +++++l +i ylh+ga+++WY+iP e++ k+e fj19226s1 932 WLNIGMVFSTSCWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLE- 977 lakvlskhfsaPdlnggeqpdldlrhlvtlisPkvleLrengipvyrfvQ +v++ l+++++p+l++++ + +isP+v L+++gi+v+r+vQ fj19226s1 978 --DVVHTL-----LQANGTPGLQMLESNVMISPEV--LCKEGIKVHRTVQ 1018 kpGEfVitfPgayHavfNlGfniaeavNF<-* ++G+fV++fPg++ + +++G+ ++e+v+F fj19226s1 1019 QSGQFVVCFPGSFVSKVCCGYSVSETVHF 1047 PF02373.13.ls: domain 1 of 1, from 932 to 1047: score 174.2, E = 3e-49 *->wlYvGmpfSttpwHiEdqglySinylhfgapkvWYgiPseyaekfek wl +Gm fSt +w +++++l +i ylh+ga+++WY+iP e++ k+e fj19226s1 932 WLNIGMVFSTSCWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLE- 977 lakvlskhfsaPdlnggeqpdldlrhlvtlisPkvleLrengipvyrfvQ +v++ l+++++p+l++++ + +isP+v L+++gi+v+r+vQ fj19226s1 978 --DVVHTL-----LQANGTPGLQMLESNVMISPEV--LCKEGIKVHRTVQ 1018 kpGEfVitfPgayHavfNlGfniaeavNF<-* ++G+fV++fPg++ + +++G+ ++e+v+F fj19226s1 1019 QSGQFVVCFPGSFVSKVCCGYSVSETVHF 1047 PF02928.6.fs: domain 1 of 1, from 1155 to 1209: score 100.3, E = 5.3e-27 *->CqiCkttlyLSAvvCsCspnklvCLeCALRHvkdLCssCepkdltLl CqiC++++yLS+vv+++ +n+++CLeCALRHv++++s C++ l+L+ fj19226s1 1155 CQICQHLCYLSMVVQEN-ENVVFCLECALRHVEKQKS-CRG--LKLM 1197 YRYtlDeLpsLv<-* YRY++++++sLv fj19226s1 1198 YRYDEEQIISLV 1209 PF02928.6.ls: domain 1 of 1, from 1155 to 1209: score 102.2, E = 1.4e-27 *->CqiCkttlyLSAvvCsCspnklvCLeCALRHvkdLCssCepkdltLl CqiC++++yLS+vv+++ +n+++CLeCALRHv++++s C++ l+L+ fj19226s1 1155 CQICQHLCYLSMVVQEN-ENVVFCLECALRHVEKQKS-CRG--LKLM 1197 YRYtlDeLpsLv<-* YRY++++++sLv fj19226s1 1198 YRYDEEQIISLV 1209 //