hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090914/iprscan-20090914-13315119/chunk_1/iprscan-20090914-13315119.nocrc
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Query sequence: fj19226s1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00558                                                 182.6    3.8e-50   1
SM00501                                                 112.7    4.1e-29   1
SM00545                                                  82.6    4.7e-20   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00545    1/1     572   613 ..     1    45 []    82.6  4.7e-20
SM00501    1/1     638   730 ..     1    95 []   112.7  4.1e-29
SM00558    1/1     900  1064 ..     1   214 []   182.6  3.8e-50

Alignments of top-scoring domains:
SM00545: domain 1 of 1, from 572 to 613: score 82.6, E = 4.7e-20
                   *->eiPvfyPteeEFkDplaYIskIrpqgGeAekyGIvKvVPPknWkP<-
                      eiPv++P+ +EF+Dpl YI+++r    + ek+G+++v+PP++W+P  
   fj19226s1   572    EIPVLRPSAKEFHDPLIYIESVRA---QVEKFGMCRVIPPPDWRP   613  

                   *
                    
   fj19226s1     -   -    

SM00501: domain 1 of 1, from 638 to 730: score 112.7, E = 4.1e-29
                   *->rerelFldrLykFmeergtpilkiPviggkpklDLyrLyrlVkerGG
                        +++ l++++k+++++g +++++P igg++ lDL +++rl++e+GG
   fj19226s1   638    GPNVQRLACIKKHLKSQGITMDELPLIGGCE-LDLACFFRLINEMGG 683  

                   ydaVtkdkkWkeiaeelgipdtistsasssLrkhYlryLlpfEeflrg<-
                   +++Vt  kkW+++a++l+ip t  ++ +++L+++Y++yLl+++ +  +  
   fj19226s1   684 MQQVTDLKKWNKLADMLRIPRT-AQDRLAKLQEAYCQYLLSYDSLSPE   730  

                   *
                    
   fj19226s1     -   -    

SM00558: domain 1 of 1, from 900 to 1064: score 182.6, E = 3.8e-50
                   *->lylqqlwnlaklPffeytdpkpksgklnllsdlpkerywedilgpdv
                      +++++ wnl+ lP          +  +++l++l+       ++g+++
   fj19226s1   900    PFSRHGWNLTVLP----------NNTGSILRHLG------AVPGVTI 930  

                   gkPkpkpylymGmaEsrgstTpwHiDdydlySvNylhqgagedGKrWyli
                         p+l +Gm    +st +w  D+++l  + ylh ga+   ++Wy+i
   fj19226s1   931 ------PWLNIGMV---FSTSCWSRDQNHLPYIDYLHTGAD---CIWYCI 968  

                   Ppedaeklekllkkhgkefhistapdlfkeqpdllihlstwispevlkkr
                   P e+++kle++ + +         ++ +++++++++++  +ispevl+k+
   fj19226s1   969 PAEEENKLEDVVHTL---------LQANGTPGLQMLESNVMISPEVLCKE 1009 

                   lkeeperPlfqgvpvyrfvQkpGefvfiPpGwyHaVfnlGkfniavavNF
                   +           ++v+r+vQ+ G+fv+++pG++ + +++G ++++++v+F
   fj19226s1  1010 G-----------IKVHRTVQQSGQFVVCFPGSFVSKVCCG-YSVSETVHF 1047 

                   aspewlpmglrlveelr<-*
                   a+ +w +mg++ ++e +   
   fj19226s1  1048 ATTQWTSMGFETAKEMK    1064 

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