hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-19531744/chunk_1/iprscan-20080810-19531744.nocrc
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Query sequence: fj19808
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00595.14.fs PDZ domain (Also known as DHR or GLGF)          84.9    3.3e-23   1
PF00595.14.ls PDZ domain (Also known as DHR or GLGF)          86.8    6.1e-23   1
PF02828.7.fs L27 domain                                      76.8    5.5e-21   1
PF02828.7.ls L27 domain                                      78.8    1.5e-20   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02828.7.fs   1/1      15    70 ..     1    56 []    76.8  5.5e-21
PF02828.7.ls   1/1      15    70 ..     1    56 []    78.8  1.5e-20
PF00595.14.fs   1/1      95   174 ..     1    86 []    84.9  3.3e-23
PF00595.14.ls   1/1      95   174 ..     1    86 []    86.8  6.1e-23

Alignments of top-scoring domains:
PF02828.7.fs: domain 1 of 1, from 15 to 70: score 76.8, E = 5.5e-21
                   *->avqralelLeeLqslleaseedlaeLrkiLqsphlqsLlevHDkvae
                      + +ra+elLe+Lq+++e+++++l++L+++Lqs+++ +++ev+++v+e
     fj19808    15    DICRAIELLEKLQRSGEVPPQKLQALQRVLQSEFCNAVREVYEHVYE 61   

                   kvydppspe<-*
                   +v++++spe   
     fj19808    62 TVDISSSPE    70   

PF02828.7.ls: domain 1 of 1, from 15 to 70: score 78.8, E = 1.5e-20
                   *->avqralelLeeLqslleaseedlaeLrkiLqsphlqsLlevHDkvae
                      + +ra+elLe+Lq+++e+++++l++L+++Lqs+++ +++ev+++v+e
     fj19808    15    DICRAIELLEKLQRSGEVPPQKLQALQRVLQSEFCNAVREVYEHVYE 61   

                   kvydppspe<-*
                   +v++++spe   
     fj19808    62 TVDISSSPE    70   

PF00595.14.fs: domain 1 of 1, from 95 to 174: score 84.9, E = 3.3e-23
                   *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL
                       v l+k  + +glGf+i gg+++    +i++s+++pG g A++ G L
     fj19808    95    VVELPK--TEEGLGFNIMGGKEQN--SPIYISRIIPG-GIADRHGGL 136  

                   qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                   + GDq+lsvNG+++e+  he+av++lk + g +v+L+v+   
     fj19808   137 KRGDQLLSVNGVSVEGEHHEKAVELLKAAQG-KVKLVVR    174  

PF00595.14.ls: domain 1 of 1, from 95 to 174: score 86.8, E = 6.1e-23
                   *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL
                       v l+k  + +glGf+i gg+++    +i++s+++pG g A++ G L
     fj19808    95    VVELPK--TEEGLGFNIMGGKEQN--SPIYISRIIPG-GIADRHGGL 136  

                   qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                   + GDq+lsvNG+++e+  he+av++lk + g +v+L+v+   
     fj19808   137 KRGDQLLSVNGVSVEGEHHEKAVELLKAAQG-KVKLVVR    174  

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