hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-19531744/chunk_1/iprscan-20080810-19531744.nocrc
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Query sequence: fj19808
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00228                                                  94.4    1.3e-23   1
SM00569                                                  65.6    6.3e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00569    1/1      15    70 ..     1    62 []    65.6  6.3e-15
SM00228    1/1     103   177 ..     1    80 []    94.4  1.3e-23

Alignments of top-scoring domains:
SM00569: domain 1 of 1, from 15 to 70: score 65.6, E = 6.3e-15
                   *->avqlllevLeeLqsllepkedrqedlqeLrrlLqsmFsphlqaLlki
                      + ++++e+Le+Lq+++e+++   ++lq+L+r+Lqs   ++++a++++
     fj19808    15    DICRAIELLEKLQRSGEVPP---QKLQALQRVLQS---EFCNAVREV 55   

                   HDkvaeteydpplpp<-*
                   +++v+et++ +++p+   
     fj19808    56 YEHVYETVDISSSPE    70   

SM00228: domain 1 of 1, from 103 to 177: score 94.4, E = 1.3e-23
                   *->gglGfsivg......gifvssvvpGspAakaGrkslglLkvGDvIle
                      +glGf+i g+++++++i++s+++pG+ A+++G+     Lk GD++l+
     fj19808   103    EGLGFNIMGgkeqnsPIYISRIIPGGIADRHGG-----LKRGDQLLS 144  

                   VNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   VNG +sveg  he av+llk+a+g     kv+L+v++ +   
     fj19808   145 VNG-VSVEGEHHEKAVELLKAAQG-----KVKLVVRYTP    177  

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