hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090416/iprscan-20090416-15362974/chunk_1/iprscan-20090416-15362974.nocrc
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Query sequence: fj19988
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00646.23.fs F-box domain                                    40.4    1.1e-09   1
PF00646.23.ls F-box domain                                    42.4    1.4e-09   1
PF02207.10.fs Putative zinc finger in N-recognin (UBR box)    40.7    1.6e-09   1
PF02207.10.ls Putative zinc finger in N-recognin (UBR box)    38.8    1.7e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00646.23.fs   1/1     136   183 ..     1    46 []    40.4  1.1e-09
PF00646.23.ls   1/1     136   183 ..     1    46 []    42.4  1.4e-09
PF02207.10.ls   1/1     820   885 ..     1    83 []    38.8  1.7e-08
PF02207.10.fs   1/1     833   885 ..    20    83 .]    40.7  1.6e-09

Alignments of top-scoring domains:
PF00646.23.fs: domain 1 of 1, from 136 to 183: score 40.4, E = 1.1e-09
                   *->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwk.kl
                         ++LPde++l+I+s+L   dl+r+++V+kr+ +l++++ lwk+ +
     fj19988   136    YLQEKLPDEVVLKIFSYLLEQDLCRAACVCKRFSELANDPiLWKrLY 182  

                   l<-*
                       
     fj19988   183 M    183  

PF00646.23.ls: domain 1 of 1, from 136 to 183: score 42.4, E = 1.4e-09
                   *->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwk.kl
                         ++LPde++l+I+s+L   dl+r+++V+kr+ +l++++ lwk+ +
     fj19988   136    YLQEKLPDEVVLKIFSYLLEQDLCRAACVCKRFSELANDPiLWKrLY 182  

                   l<-*
                       
     fj19988   183 M    183  

PF02207.10.ls: domain 1 of 1, from 820 to 885: score 38.8, E = 1.7e-08
                   *->klCghvEGfkpgEtiNQnlYrCkTCsldpGstcvlCyeCFrascHkg
                      k+ +++    p   +    YrC+TC++++   +++C++C   +cH g
     fj19988   820    KISSYT--SYPMHDF----YRCHTCNTTD--RNAICVNCIK-KCHQG 857  

                   HdvlvslktsagsEGgiCDCGdkeAwnedlkCkahe<-*
                   Hd  v++ +  +   ++CDCG+    + + +C +     
     fj19988   858 HD--VEFIRHDR---FFCDCGAG---TLSNPCTLAG    885  

PF02207.10.fs: domain 1 of 1, from 833 to 885: score 40.7, E = 1.6e-09
                   *->YrCkTCsldpGstcvlCyeCFrascHkgHdvlvslktsagsEGgiCD
                      YrC+TC++++   +++C++C   +cH gHd  v++ +  +   ++CD
     fj19988   833    YRCHTCNTTD--RNAICVNCIK-KCHQGHD--VEFIRHDR---FFCD 871  

                   CGdkeAwnedlkCkahe<-*
                   CG+    + + +C +     
     fj19988   872 CGAG---TLSNPCTLAG    885  

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