hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20090416/iprscan-20090416-15362974/chunk_1/iprscan-20090416-15362974.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj19988 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00710 216.2 3e-60 19 SM00722 117.4 1.6e-30 3 SM00256 42.9 4.2e-08 1 SM00396 41.3 1.3e-07 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00256 1/1 141 181 .. 1 41 [] 42.9 4.2e-08 SM00710 1/19 377 399 .. 1 22 [] 6.3 1.3e+03 SM00722 1/3 400 536 .. 1 218 [] 41.7 9.6e-08 SM00710 2/19 400 422 .. 1 22 [] 15.3 8.9 SM00710 3/19 423 445 .. 1 22 [] 12.5 62 SM00710 4/19 446 468 .. 1 22 [] 5.5 1.7e+03 SM00710 5/19 469 491 .. 1 22 [] 10.6 2.3e+02 SM00710 6/19 492 514 .. 1 22 [] 8.1 7.6e+02 SM00710 7/19 515 537 .. 1 22 [] 18.0 1.4 SM00710 8/19 538 560 .. 1 22 [] 16.6 3.5 SM00722 2/3 552 674 .. 1 218 [] 17.6 1.7 SM00710 9/19 561 583 .. 1 22 [] 7.7 8.7e+02 SM00710 10/19 584 606 .. 1 22 [] 9.7 4.1e+02 SM00710 11/19 607 629 .. 1 22 [] 9.4 5e+02 SM00710 12/19 630 652 .. 1 22 [] 13.2 38 SM00710 13/19 653 675 .. 1 22 [] 16.2 4.6 SM00710 14/19 676 698 .. 1 22 [] 10.9 1.8e+02 SM00722 3/3 690 819 .. 1 218 [] 58.0 1.2e-12 SM00710 15/19 699 721 .. 1 22 [] 16.9 2.9 SM00710 16/19 722 744 .. 1 22 [] 9.9 3.6e+02 SM00710 17/19 745 767 .. 1 22 [] 10.9 1.9e+02 SM00710 18/19 768 790 .. 1 22 [] 11.8 98 SM00710 19/19 791 812 .. 1 22 [] 6.7 1.2e+03 SM00396 1/1 820 885 .. 1 79 [] 41.3 1.3e-07 Alignments of top-scoring domains: SM00256: domain 1 of 1, from 141 to 181: score 42.9, E = 4.2e-08 *->LPieileeIlskLdpkdllrlrkVsrkwrslidshdfwfkr<-* LP+e++++I+s+L +dl+r+ +V++++ +l ++ +w+++ fj19988 141 LPDEVVLKIFSYLLEQDLCRAACVCKRFSELANDPILWKRL 181 SM00710: domain 1 of 19, from 377 to 399: score 6.3, E = 1.3e+03 *->s.nvtienntirnnggdGiyikg<-* + +ti++++i+++ + G+yi++ fj19988 377 GaCPTIKHCNISDCENVGLYITD 399 SM00722: domain 1 of 3, from 400 to 536: score 41.7, E = 9.6e-08 *->iavGiviellrisvngmytsdsevsagnltltgaggavvnedsgdgs +a+Gi+ ++ + + ag +v +++ fj19988 400 HAQGIYEDNEISN-----------------NALAGIWVK---NHGNP 426 grgsnitinandvrsv..vrGvtiggassnivdvdidgnavtGiyvsass + +n ++++ dv + + ++G ++ +++i +n++ G v a fj19988 427 IIRRNHIHHGRDVGVFtfDHGMGYFE------SCNIHRNRIAGFEVKA-- 468 ggrilpgiikkvavettgsskragttknliidNvtfngneinsf.aaGiv + N t++++ei++++ +Gi+ fj19988 469 ------------------------------YANPTVVRCEIHHGqTGGIY 488 vdagsegnignsivvervlvigNtiignavatsnniiwSdgdGiylsdss v+++++g ++i+N i n+ + G++++++s fj19988 489 VHEKGRG-----------QFIENKIYANN-----------FAGVWITSNS 516 ggdldgneitnnrdgaardGievy<-* + +++gn+i n++ ++G++++ fj19988 517 DPTIRGNSIFNGN----QGGVYIF 536 SM00710: domain 2 of 19, from 400 to 422: score 15.3, E = 8.9 *->s.nvtienntirnnggdGiyikg<-* + + e+n+i+nn+ +Gi++k+ fj19988 400 HaQGIYEDNEISNNALAGIWVKN 422 SM00710: domain 3 of 19, from 423 to 445: score 12.5, E = 62 *->s.nvtienntirnnggdGiyikg<-* ++n++i++n+i+++++ G++ + fj19988 423 HgNPIIRRNHIHHGRDVGVFTFD 445 SM00710: domain 4 of 19, from 446 to 468: score 5.5, E = 1.7e+03 *->s.nvtienntirnnggdGiyikg<-* ++ +e ++i+ n+ +G+ +k+ fj19988 446 HgMGYFESCNIHRNRIAGFEVKA 468 SM00710: domain 5 of 19, from 469 to 491: score 10.6, E = 2.3e+02 *->s.nvtienntirnnggdGiyikg<-* n+t+ +++i+++ +Giy++ fj19988 469 YaNPTVVRCEIHHGQTGGIYVHE 491 SM00710: domain 6 of 19, from 492 to 514: score 8.1, E = 7.6e+02 *->s.nvtienntirnnggdGiyikg<-* ++ ++ n i+ n+ +G++i++ fj19988 492 KgRGQFIENKIYANNFAGVWITS 514 SM00710: domain 7 of 19, from 515 to 537: score 18.0, E = 1.4 *->s.nvtienntirnnggdGiyikg<-* ++++ti++n i n++ +G+yi g fj19988 515 NsDPTIRGNSIFNGNQGGVYIFG 537 SM00710: domain 8 of 19, from 538 to 560: score 16.6, E = 3.5 *->s.nvtienntirnnggdGiyikg<-* ++ ie+n+i++n+ +Gi i++ fj19988 538 DgRGLIEGNDIYGNALAGIQIRT 560 SM00722: domain 2 of 3, from 552 to 674: score 17.6, E = 1.7 *->iavGiviellrisvngmytsdsevsagnltltgaggavvnedsgdgs + Gi i++ ++ ++ + + ++ fj19988 552 ALAGIQIRTNSC------------------PIVRHNKIH------DG 574 grgsnitinandvrsvvrGvtiggassnivdvdidgnavtGiyvsassgg +g+ ++++ ++Gv+ ++ + n+ G++v++ fj19988 575 QHGGIYVHEK------GQGVIEEN--------EVYSNTLAGVWVTT---- 606 rilpgiikkvavettgsskragttknliidNvtfngneinsfaaGivvda ++ + ++N++++g G+++++ fj19988 607 ----------------------GSTPVLRRNRIHSGK-----QVGVYFYD 629 gsegnignsivvervlvigNtiignavatsnniiwSdgdGiylsdssggd +++g ++++N i + +G+ + ++s+ fj19988 630 NGHG-----------VLEDNDIYNHM-----------YSGVQIRTGSNPK 657 ldgneitnnrdgaardGievy<-* +++n i++++ ++Gi vy fj19988 658 IRRNKIWGGQ----NGGILVY 674 SM00710: domain 9 of 19, from 561 to 583: score 7.7, E = 8.7e+02 *->s.nvtienntirnnggdGiyikg<-* ++ +++++n i+++ +Giy++ fj19988 561 NsCPIVRHNKIHDGQHGGIYVHE 583 SM00710: domain 10 of 19, from 584 to 606: score 9.7, E = 4.1e+02 *->s.nvtienntirnnggdGiyikg<-* + +ie n+++ n+ +G+++++ fj19988 584 KgQGVIEENEVYSNTLAGVWVTT 606 SM00710: domain 11 of 19, from 607 to 629: score 9.4, E = 5e+02 *->s.nvtienntirnnggdGiyikg<-* ++ +++++n+i+ + G+y+++ fj19988 607 GsTPVLRRNRIHSGKQVGVYFYD 629 SM00710: domain 12 of 19, from 630 to 652: score 13.2, E = 38 *->s.nvtienntirnnggdGiyikg<-* +++ ++e+n+i+n ++G+ i++ fj19988 630 NgHGVLEDNDIYNHMYSGVQIRT 652 SM00710: domain 13 of 19, from 653 to 675: score 16.2, E = 4.6 *->s.nvtienntirnnggdGiyikg<-* ++n++i++n i ++ ++Gi +++ fj19988 653 GsNPKIRRNKIWGGQNGGILVYN 675 SM00710: domain 14 of 19, from 676 to 698: score 10.9, E = 1.8e+02 *->s.nvtienntirnnggdGiyikg<-* s+ ie+n+i +n+ +G++ik+ fj19988 676 SgLGCIEDNEIFDNAMAGVWIKT 698 SM00722: domain 3 of 3, from 690 to 819: score 58.0, E = 1.2e-12 *->iavGiviellrisvngmytsdsevsagnltltgaggavvnedsgdgs + G +i++++ t +++ + ++ fj19988 690 AMAGVWIKTDSN------------------PTLRRNKIH------DG 712 grgsnitinandvrsvvrGvtiggassnivdvdidgnavtGiyvsassgg ++g+ +++n+ +rG+ ++ di +na G+ +s+ s++ fj19988 713 RDGGICIFNG------GRGLLEEN--------DIFRNAQAGVLISTNSHP 748 rilpgiikkvavettgsskragttknliidNvtfngneinsfaaGivvda + + N++f+g+ aaGi++++ fj19988 749 IL--------------------------RKNRIFDGF-----AAGIEITN 767 gsegnignsivvervlvigNtiignavatsnniiwSdgdGiylsdssggd ++++ ++gN+i++n+ ++G +l ++++++ fj19988 768 HATA-----------TLEGNQIFNNR-----------FGGLFLASGVNVT 795 ldgneitnnrdgaa...rdGievy<-* +n i+nn+d++++ + G++ y fj19988 796 MKDNKIMNNQDAIEkavSRGQCLY 819 SM00710: domain 15 of 19, from 699 to 721: score 16.9, E = 2.9 *->s.nvtienntirnnggdGiyikg<-* +n+t+++n i++++++Gi i + fj19988 699 DsNPTLRRNKIHDGRDGGICIFN 721 SM00710: domain 16 of 19, from 722 to 744: score 9.9, E = 3.6e+02 *->s.nvtienntirnnggdGiyikg<-* +++ +e n+i n+ +G+ i++ fj19988 722 GgRGLLEENDIFRNAQAGVLIST 744 SM00710: domain 17 of 19, from 745 to 767: score 10.9, E = 1.9e+02 *->s.nvtienntirnnggdGiyikg<-* +++++++ n+i ++ +Gi i++ fj19988 745 NsHPILRKNRIFDGFAAGIEITN 767 SM00710: domain 18 of 19, from 768 to 790: score 11.8, E = 98 *->s.nvtienntirnnggdGiyikg<-* + +t+e+n i nn+ +G+++ + fj19988 768 HaTATLEGNQIFNNRFGGLFLAS 790 SM00710: domain 19 of 19, from 791 to 812: score 6.7, E = 1.2e+03 *->s.nvtienntirnnggdGiyikg<-* + nvt+++n i nn + +i fj19988 791 GvNVTMKDNKIMNNQD-AIEKAV 812 SM00396: domain 1 of 1, from 820 to 885: score 41.3, E = 1.3e-07 *->dvCtyvftggevinQhlYrCkTCaldpetcvlCsdCFrsncHkgHdv ++ +y+ + + YrC+TC++++ +++C++C +cH gHd fj19988 820 KISSYTSYPMHDF----YRCHTCNTTD-RNAICVNCIK-KCHQGHD- 859 lvslktsrgsGgiCDCGdkeAwnedlkCkahe<-* v++ + + ++CDCG + + +C + + fj19988 860 -VEFIRHDR--FFCDCGAG---TLSNPCTLAG 885 //