hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-20060355/chunk_1/iprscan-20080810-20060355.nocrc
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Query sequence: fj20077
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00595.14.ls PDZ domain (Also known as DHR or GLGF)         314.5    1.8e-91   3
PF00595.14.fs PDZ domain (Also known as DHR or GLGF)         308.6    1.1e-89   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00595.14.fs   1/3     111   195 ..     1    86 []   107.8  1.2e-29
PF00595.14.ls   1/3     111   195 ..     1    86 []   109.8  7.4e-30
PF00595.14.fs   2/3     206   290 ..     1    86 []   101.3  7.7e-28
PF00595.14.ls   2/3     206   290 ..     1    86 []   103.3  6.5e-28
PF00595.14.fs   3/3     434   512 ..     1    86 []    99.4  2.7e-27
PF00595.14.ls   3/3     434   512 ..     1    86 []   101.4  2.5e-27

Alignments of top-scoring domains:
PF00595.14.fs: domain 1 of 3, from 111 to 195: score 107.8, E = 1.2e-29
                   *->evtlekedkrgglGfsikggsdkga...dkgifvsevlpGsgaAeag
                      e+tle+  +++glGfsi+gg+d+++ ++d+gif+++++pG gaA+ +
     fj20077   111    EITLER--GNSGLGFSIAGGTDNPHigdDPGIFITKIIPG-GAAAED 154  

                   GrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                   GrL+++D Il+vN +d++ +sh +av+alk++g+  v+L v+   
     fj20077   155 GRLRVNDCILRVNEVDVSEVSHSKAVEALKEAGS-IVRLYVR    195  

PF00595.14.ls: domain 1 of 3, from 111 to 195: score 109.8, E = 7.4e-30
                   *->evtlekedkrgglGfsikggsdkga...dkgifvsevlpGsgaAeag
                      e+tle+  +++glGfsi+gg+d+++ ++d+gif+++++pG gaA+ +
     fj20077   111    EITLER--GNSGLGFSIAGGTDNPHigdDPGIFITKIIPG-GAAAED 154  

                   GrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                   GrL+++D Il+vN +d++ +sh +av+alk++g+  v+L v+   
     fj20077   155 GRLRVNDCILRVNEVDVSEVSHSKAVEALKEAGS-IVRLYVR    195  

PF00595.14.fs: domain 2 of 3, from 206 to 290: score 101.3, E = 7.7e-28
                   *->evtlekedkrgglGfsikggsdkga...dkgifvsevlpGsgaAeag
                      e++l+k  ++ glGfsi+gg ++++ ++d++i+v++++ G gaA+++
     fj20077   206    EIKLFK--GPKGLGFSIAGGVGNQHipgDNSIYVTKIIDG-GAAQKD 249  

                   GrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                   GrLq+GD++l vN+ +le ++heeav++lk++++ +v L+v    
     fj20077   250 GRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSE-VVYLKVG    290  

PF00595.14.ls: domain 2 of 3, from 206 to 290: score 103.3, E = 6.5e-28
                   *->evtlekedkrgglGfsikggsdkga...dkgifvsevlpGsgaAeag
                      e++l+k  ++ glGfsi+gg ++++ ++d++i+v++++ G gaA+++
     fj20077   206    EIKLFK--GPKGLGFSIAGGVGNQHipgDNSIYVTKIIDG-GAAQKD 249  

                   GrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                   GrLq+GD++l vN+ +le ++heeav++lk++++ +v L+v    
     fj20077   250 GRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSE-VVYLKVG    290  

PF00595.14.fs: domain 3 of 3, from 434 to 512: score 99.4, E = 2.7e-27
                   *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL
                      +v+l+k  +  glGf+i+gg+d+   +gifvs +l+G g+A+ +G+L
     fj20077   434    KVVLHK--GSTGLGFNIVGGEDG---EGIFVSFILAG-GPADLSGEL 474  

                   qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                   q GDqIlsvNG dl++ she+a++alkg+g+ +vt+  +   
     fj20077   475 QRGDQILSVNGIDLRGASHEQAAAALKGAGQ-TVTIIAQ    512  

PF00595.14.ls: domain 3 of 3, from 434 to 512: score 101.4, E = 2.5e-27
                   *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL
                      +v+l+k  +  glGf+i+gg+d+   +gifvs +l+G g+A+ +G+L
     fj20077   434    KVVLHK--GSTGLGFNIVGGEDG---EGIFVSFILAG-GPADLSGEL 474  

                   qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                   q GDqIlsvNG dl++ she+a++alkg+g+ +vt+  +   
     fj20077   475 QRGDQILSVNGIDLRGASHEQAAAALKGAGQ-TVTIIAQ    512  

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