hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-20060355/chunk_1/iprscan-20080810-20060355.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj20077 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00228 281.6 5.8e-80 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00228 1/3 119 198 .. 1 80 [] 94.2 1.5e-23 SM00228 2/3 214 293 .. 1 80 [] 90.5 2e-22 SM00228 3/3 442 515 .. 1 80 [] 96.9 2.4e-24 Alignments of top-scoring domains: SM00228: domain 1 of 3, from 119 to 198: score 94.2, E = 1.5e-23 *->gglGfsivg...........gifvssvvpGspAakaGrkslglLkvG glGfsi+g++++++ ++++gif+++++pG++Aa +Gr L+v+ fj20077 119 SGLGFSIAGgtdnphigddpGIFITKIIPGGAAAEDGR-----LRVN 160 DvIleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-* D Il+VN ++v+ ++h av++lk+ag v+L v+R+ fj20077 161 DCILRVNE-VDVSEVSHSKAVEALKEAGS-----IVRLYVRRRR 198 SM00228: domain 2 of 3, from 214 to 293: score 90.5, E = 2e-22 *->gglGfsivg...........gifvssvvpGspAakaGrkslglLkvG +glGfsi+g+ ++++ ++++ i+v+++++G++A k+Gr L+vG fj20077 214 KGLGFSIAGgvgnqhipgdnSIYVTKIIDGGAAQKDGR-----LQVG 255 DvIleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-* D++l VN+ s+e +theeav++lk++++ +v L+v ++ fj20077 256 DRLLMVNN-YSLEEVTHEEAVAILKNTSE-----VVYLKVGKPT 293 SM00228: domain 3 of 3, from 442 to 515: score 96.9, E = 2.4e-24 *->gglGfsivg.....gifvssvvpGspAakaGrkslglLkvGDvIleV glGf+ivg+++++gifvs +++G+pA+ +G L+ GD+Il+V fj20077 442 TGLGFNIVGgedgeGIFVSFILAGGPADLSGE-----LQRGDQILSV 483 NGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-* NG ++++g++he+a+++lk+ag+ +vt++ ++++ fj20077 484 NG-IDLRGASHEQAAAALKGAGQ-----TVTIIAQYQP 515 //