hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-20190391/chunk_1/iprscan-20080810-20190391.nocrc
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Query sequence: fj20184
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PF00520.21.fs Ion transport protein                          81.9    1.6e-22   1
PF00520.21.ls Ion transport protein                          83.7    5.2e-22   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PF00520.21.fs   1/1      47   231 ..     1   224 []    81.9  1.6e-22
PF00520.21.ls   1/1      47   231 ..     1   224 []    83.7  5.2e-22

Alignments of top-scoring domains:
PF00520.21.fs: domain 1 of 1, from 47 to 231: score 81.9, E = 1.6e-22
                   *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl
                       +++++ ++F+++  +k + +g+        ++ ++ w +  ++v +
     fj20184    47    SVEVLCLLVFAADLSVKGYLFGW-------AHFQKNLWLLGYLVVLV 86   

                   pslislilsllgggsegdlyvreskdstlse.gspgllsvlrllRllRvL
                   +sl++ ++sl+ +                +e++           R+ R+L
     fj20184    87 VSLVDWTVSLSLVC---------------HEpL-----------RIRRLL 110  

                   RllrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaii
                   R++ l++ + +     +++   l+++  sl+ +++v+lll++ l+ F  +
     fj20184   111 RPFFLLQNSSM-----MKKT--LKCIRWSLPEMASVGLLLAIHLCLFTMF 153  

                   gvqlFggklnkccnpingntnFdsfgnaflwlFqtmTteGwgdvmpdtla
                   g++lF g + ++    ++ t F++ ++++ +l++++Tt + +dvm  +++
     fj20184   154 GMLLFAGGKQDDGQDRERLTYFQNLPESLTSLLVLLTTANNPDVMIPAYS 203  

                   gtvlgyiyfvsfiilgsflllNLfiavi<-*
                    +  + i+f++f ++gs++l+NL+ a+i   
     fj20184   204 KNRAYAIFFIVFTVIGSLFLMNLLTAII    231  

PF00520.21.ls: domain 1 of 1, from 47 to 231: score 83.7, E = 5.2e-22
                   *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl
                       +++++ ++F+++  +k + +g+        ++ ++ w +  ++v +
     fj20184    47    SVEVLCLLVFAADLSVKGYLFGW-------AHFQKNLWLLGYLVVLV 86   

                   pslislilsllgggsegdlyvreskdstlse.gspgllsvlrllRllRvL
                   +sl++ ++sl+ +                +e++           R+ R+L
     fj20184    87 VSLVDWTVSLSLVC---------------HEpL-----------RIRRLL 110  

                   RllrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaii
                   R++ l++ + +     +++   l+++  sl+ +++v+lll++ l+ F  +
     fj20184   111 RPFFLLQNSSM-----MKKT--LKCIRWSLPEMASVGLLLAIHLCLFTMF 153  

                   gvqlFggklnkccnpingntnFdsfgnaflwlFqtmTteGwgdvmpdtla
                   g++lF g + ++    ++ t F++ ++++ +l++++Tt + +dvm  +++
     fj20184   154 GMLLFAGGKQDDGQDRERLTYFQNLPESLTSLLVLLTTANNPDVMIPAYS 203  

                   gtvlgyiyfvsfiilgsflllNLfiavi<-*
                    +  + i+f++f ++gs++l+NL+ a+i   
     fj20184   204 KNRAYAIFFIVFTVIGSLFLMNLLTAII    231  

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