hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-10360717/chunk_1/iprscan-20090618-10360717.nocrc
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Query sequence: fj20320
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00646.23.fs F-box domain                                    39.3    2.1e-09   1
PF00646.23.ls F-box domain                                    41.3    3.1e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00646.23.fs   1/1     254   302 ..     1    46 []    39.3  2.1e-09
PF00646.23.ls   1/1     254   302 ..     1    46 []    41.3  3.1e-09

Alignments of top-scoring domains:
PF00646.23.fs: domain 1 of 1, from 254 to 302: score 39.3, E = 2.1e-09
                   *->fslldLPdellleIlsrLdpkd.llrlslVSkrwrslvdsl.lwk.k
                      +++++LP+e+l++++ +L+  d + +lslV++ wr++++++ +   k
     fj20320   254    SHICSLPSEVLRHVFAFLPVEDlYWNLSLVCHLWREIISDPlFIPwK 300  

                   ll<-*
                    l   
     fj20320   301 KL    302  

PF00646.23.ls: domain 1 of 1, from 254 to 302: score 41.3, E = 3.1e-09
                   *->fslldLPdellleIlsrLdpkd.llrlslVSkrwrslvdsl.lwk.k
                      +++++LP+e+l++++ +L+  d + +lslV++ wr++++++ +   k
     fj20320   254    SHICSLPSEVLRHVFAFLPVEDlYWNLSLVCHLWREIISDPlFIPwK 300  

                   ll<-*
                    l   
     fj20320   301 KL    302  

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