hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-20434411/chunk_1/iprscan-20080810-20434411.nocrc
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Query sequence: fj21264
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00225                                                 105.0    8.6e-27   2
SM00612                                                  25.2     0.0089   4

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00612      1/4     122   171 ..     1    55 []     8.1      2.6
SM00612      2/4     172   228 ..     1    55 []     5.7      4.8
SM00612      3/4     282   337 ..     1    55 []     8.5      2.3
SM00612      4/4     338   382 ..     1    55 []     2.9       10
SM00225      1/2     486   617 ..     1   114 []    29.9  0.00035
SM00225      2/2     710   811 ..     1   114 []    75.1  8.7e-18

Alignments of top-scoring domains:
SM00612: domain 1 of 4, from 122 to 171: score 8.1, E = 2.6
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpv...psMptp
                       iYv+GG +g        ++ l+   ++D +   W +  ++   p p
     fj21264   122    AIYVFGGDNG--------KTMLNDLLRFDVKDCSWCRAfttGTPPAP 160  

                   Rsgagvaving<-*
                   R++++++v +    
     fj21264   161 RYHHSAVVYGS    171  

SM00612: domain 2 of 4, from 172 to 228: score 5.7, E = 4.8
                   *->kiYvvGGfdgttrclp.gegqrlksvEvYDpetnkWr...pvpsMpt
                        +v+GG+ g +    +++    +  + Y   t++W++ ++   +p+
     fj21264   172    SMFVFGGYTGDI--YSnSNLKNKNDLFEYKFATGQWTewkIEGRLPV 216  

                   pRsgagvaving<-*
                   +Rs +g++v  +   
     fj21264   217 ARSAHGATVYSD    228  

SM00612: domain 3 of 4, from 282 to 337: score 8.5, E = 2.3
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpv.........
                      k +v+ G++g        + ++++ +++  + ++W+++++++  +++
     fj21264   282    KMFVFSGQSG--------AKITNNLFQFEFKDKTWTRIptehllrgs 320  

                   psMptpRsgagvaving<-*
                   p+ p++R+g+ +++++    
     fj21264   321 PPPPQRRYGHTMVAFDR    337  

SM00612: domain 4 of 4, from 338 to 382: score 2.9, E = 10
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                      ++Yv+GG           ++  +   +YD + ++W++v + +   s 
     fj21264   338    HLYVFGGAAD--------NTLPNELHCYDVDFQTWEVVQPSSD--SE 374  

                   agvaving<-*
                   +g a + +   
     fj21264   375 VGGAEVPE    382  

SM00225: domain 1 of 2, from 486 to 617: score 29.9, E = 0.00035
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cDv +v g+       + + ++   H a+ +a+   S  ++   +  
     fj21264   486    CDVEFVLGE-------KEECVQG--HVAIVTAR---SRWLRRKITQa 520  

                   .................................ieldDeallievspeaF
                   +++  ++ +++  + +++ ++   ++ +++  ++ + +        +  F
     fj21264   521 rerlaqkleqeaapvpreapgvaaggarppllhVAIRE------AEARPF 564  

                   ralLnflYt.kldlpeed....venveelLelAdfldSYGqip.lvelCe
                   + l++flYt+k+  p++++ ++v+ ++++ +lA  +    q+ +l +lC 
     fj21264   565 EVLMQFLYTdKIKYPRKGhvedVLLIMDVYKLALSF----QLCrLEQLCR 610  

                   efllknl<-*
                   ++++ +    
     fj21264   611 QYIEASV    617  

SM00225: domain 2 of 2, from 710 to 811: score 75.1, E = 8.7e-18
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cD+tl+ +g         +  +a  Hka+Laa+   S+yF+a+f s 
     fj21264   710    CDITLLLDG---------HPRPA--HKAILAAR---SSYFEAMFRSf 742  

                   ........ieldDeallievspeaFralLnflYt.kldlpeedvenveel
                    +++++ +i + +    ++ s  aF+ +L+++Y +++++p+    +   +
     fj21264   743 mpedgqvnISIGE----MVPSRQAFESMLRYIYYgEVNMPP----EDSLY 784  

                   LelAdfldSY.Gqip.lvelCeefllknl<-*
                   L +A ++  Y++   +l+ +C++ l+ n    
     fj21264   785 LFAAPYY--YgFYNNrLQAYCKQNLEMNV    811  

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