hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-15203295/chunk_1/iprscan-20090525-15203295.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fj22638
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08514.2.ls STAG domain                                    255.1    1.4e-73   1
PF08514.2.fs STAG domain                                    253.2      5e-73   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08514.2.fs   1/1     162   281 ..     1   130 []   253.2    5e-73
PF08514.2.ls   1/1     162   281 ..     1   130 []   255.1  1.4e-73

Alignments of top-scoring domains:
PF08514.2.fs: domain 1 of 1, from 162 to 281: score 253.2, E = 5e-73
                   *->edsaDYPLvskgpklKkFrenLveFlstLViqcqdnslLYDdksaeG
                      eds+DYPL+++gp++KkF+++++eF+ +LV+qcq +s++YD+     
     fj22638   162    EDSGDYPLTMAGPQWKKFKSSFCEFIGVLVRQCQ-YSIIYDE----- 202  

                   vlmDnliswlvaLSsSqvRafRHTATlvaLklmTaLvsVakeLsnskett
                   ++mD++is+l++LS+SqvRafRHT+Tl+a+klmTaLv+Va++Ls ++++t
     fj22638   203 YMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSINMDNT 252  

                   qKQLtEAEkkKsrdnraneRvdsLnskLgirke<-*
                   q+Q+ EAE++K+  +raneR++ L++k   rke   
     fj22638   253 QRQY-EAERNKMIGKRANERLELLLQK---RKE    281  

PF08514.2.ls: domain 1 of 1, from 162 to 281: score 255.1, E = 1.4e-73
                   *->edsaDYPLvskgpklKkFrenLveFlstLViqcqdnslLYDdksaeG
                      eds+DYPL+++gp++KkF+++++eF+ +LV+qcq +s++YD+     
     fj22638   162    EDSGDYPLTMAGPQWKKFKSSFCEFIGVLVRQCQ-YSIIYDE----- 202  

                   vlmDnliswlvaLSsSqvRafRHTATlvaLklmTaLvsVakeLsnskett
                   ++mD++is+l++LS+SqvRafRHT+Tl+a+klmTaLv+Va++Ls ++++t
     fj22638   203 YMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSINMDNT 252  

                   qKQLtEAEkkKsrdnraneRvdsLnskLgirke<-*
                   q+Q+ EAE++K+  +raneR++ L++k   rke   
     fj22638   253 QRQY-EAERNKMIGKRANERLELLLQK---RKE    281  

//