hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-21080320/chunk_1/iprscan-20080810-21080320.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj23122 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01344.15.ls Kelch motif 349.2 6.2e-102 6 PF01344.15.fs Kelch motif 345.6 7.5e-101 6 PF07707.5.ls BTB And C-terminal Kelch 174.4 2.6e-49 1 PF07707.5.fs BTB And C-terminal Kelch 172.4 1e-48 1 PF07646.5.ls Kelch motif 161.2 2.4e-45 6 PF07646.5.fs Kelch motif 153.7 4.6e-43 6 PF00651.21.ls BTB/POZ domain 127.4 3.6e-35 1 PF00651.21.fs BTB/POZ domain 125.7 1.2e-34 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00651.21.fs 1/1 48 155 .. 1 135 [] 125.7 1.2e-34 PF00651.21.ls 1/1 48 155 .. 1 135 [] 127.4 3.6e-35 PF07707.5.ls 1/1 160 261 .. 1 103 [] 174.4 2.6e-49 PF07707.5.fs 1/1 160 261 .. 1 103 [] 172.4 1e-48 PF01344.15.ls 1/6 295 339 .. 1 45 [] 23.8 0.00055 PF01344.15.fs 1/6 305 339 .. 12 45 .] 30.3 9e-08 PF01344.15.fs 2/6 341 386 .. 1 45 [] 73.3 5.4e-20 PF07646.5.ls 2/6 341 386 .. 1 54 [] 39.2 1.3e-08 PF01344.15.ls 2/6 341 386 .. 1 45 [] 75.3 1.8e-19 PF07646.5.fs 2/6 341 386 .. 1 54 [] 37.4 2.6e-09 PF01344.15.fs 3/6 388 433 .. 1 45 [] 55.9 4.6e-15 PF07646.5.ls 3/6 388 433 .. 1 54 [] 20.4 0.0062 PF07646.5.fs 3/6 388 433 .. 1 54 [] 18.5 0.00036 PF01344.15.ls 3/6 388 433 .. 1 45 [] 57.9 3e-14 PF07646.5.ls 4/6 435 480 .. 1 54 [] 31.9 2.1e-06 PF01344.15.fs 4/6 435 480 .. 1 45 [] 68.8 9.9e-19 PF01344.15.ls 4/6 435 480 .. 1 45 [] 70.9 3.9e-18 PF07646.5.fs 4/6 435 480 .. 1 54 [] 30.0 2.6e-07 PF01344.15.fs 5/6 482 533 .. 1 45 [] 53.9 1.8e-14 PF07646.5.fs 5/6 482 533 .. 1 54 [] 23.0 2.1e-05 PF01344.15.ls 5/6 482 533 .. 1 45 [] 55.9 1.3e-13 PF07646.5.ls 5/6 482 533 .. 1 54 [] 25.0 0.00025 PF07646.5.fs 6/6 535 580 .. 1 54 [] 38.3 1.5e-09 PF01344.15.fs 6/6 535 580 .. 1 45 [] 63.4 3.4e-17 PF01344.15.ls 6/6 535 580 .. 1 45 [] 65.5 1.6e-16 PF07646.5.ls 6/6 535 580 .. 1 54 [] 40.1 6.8e-09 Alignments of top-scoring domains: PF00651.21.fs: domain 1 of 1, from 48 to 155: score 125.7, E = 1.2e-34 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal +++ +++++lcDV+Lv+gd ++++AH++vL++ S+YF a+ fj23122 48 MENYLRHKQLCDVILVAGD--------RRIPAHRLVLSSVSDYFAAM 86 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks Ft++ e+ ++ ei +e+v+p ++ l++++Ytg+l+++ fj23122 87 FTND------VREARQE-EIKMEGVEPNSLWSLIQYAYTGRLELK----- 124 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* e+n+e lL++A +llq+ +v+aC++fl k+l fj23122 125 ------EDNIECLLSTA-CLLQLSQVVEACCKFLMKQL 155 PF00651.21.ls: domain 1 of 1, from 48 to 155: score 127.4, E = 3.6e-35 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal +++ +++++lcDV+Lv+gd ++++AH++vL++ S+YF a+ fj23122 48 MENYLRHKQLCDVILVAGD--------RRIPAHRLVLSSVSDYFAAM 86 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks Ft++ e+ ++ ei +e+v+p ++ l++++Ytg+l+++ fj23122 87 FTND------VREARQE-EIKMEGVEPNSLWSLIQYAYTGRLELK----- 124 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* e+n+e lL++A +llq+ +v+aC++fl k+l fj23122 125 ------EDNIECLLSTA-CLLQLSQVVEACCKFLMKQL 155 PF07707.5.ls: domain 1 of 1, from 160 to 261: score 174.4, E = 2.6e-49 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie CLgIr+fAda+gc++L+++A+++++++F+eV++++EF L++ ++ + fj23122 160 CLGIRSFADAQGCTDLHKVAHNYTMEHFMEVIRNQEFVLLPASEIAK 206 lLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLspky lL+sD+ n+p+Ee++++A++ Wv+hd+e+R+k+l++LL+++RLpLL p++ fj23122 207 LLASDDMNIPNEETILNALLTWVRHDLEQRRKDLSKLLAYIRLPLLAPQF 256 Llevve<-* L + +e fj23122 257 LAD-ME 261 PF07707.5.fs: domain 1 of 1, from 160 to 261: score 172.4, E = 1e-48 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie CLgIr+fAda+gc++L+++A+++++++F+eV++++EF L++ ++ + fj23122 160 CLGIRSFADAQGCTDLHKVAHNYTMEHFMEVIRNQEFVLLPASEIAK 206 lLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLspky lL+sD+ n+p+Ee++++A++ Wv+hd+e+R+k+l++LL+++RLpLL p++ fj23122 207 LLASDDMNIPNEETILNALLTWVRHDLEQRRKDLSKLLAYIRLPLLAPQF 256 Llevve<-* L + +e fj23122 257 LAD-ME 261 PF01344.15.ls: domain 1 of 6, from 295 to 339: score 23.8, E = 0.00055 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< pR+ ++ g ++++GG+d++ s+e+YD++tn Wt++++m+ fj23122 295 PRTKPRKSTV-GTLFAVGGMDStKGATSIEKYDLRTNMWTPVANMN 339 -* fj23122 - - PF01344.15.fs: domain 1 of 6, from 305 to 339: score 30.3, E = 9e-08 *->gkiYviGGydg.qslnsvevYDpetntWtklpsmp<-* g ++++GG+d++ s+e+YD++tn Wt++++m+ fj23122 305 GTLFAVGGMDStKGATSIEKYDLRTNMWTPVANMN 339 PF01344.15.fs: domain 2 of 6, from 341 to 386: score 73.3, E = 5.4e-20 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R +gv+vld+k+Yv+GG+dg ln+ve+Y+p+t+tW+ +p+m+ fj23122 341 RRLQFGVAVLDDKLYVVGGRDGlKTLNTVECYNPKTKTWSVMPPMS 386 -* fj23122 - - PF07646.5.ls: domain 2 of 6, from 341 to 386: score 39.2, E = 1.3e-08 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r + ++v+++klyvvGG+ +g ++++ +++p+t++W fj23122 341 RRLQFGVAVLDDKLYVVGGR--------DGLKTLNTVECYNPKTKTW 379 eklpalp<-* + +p++ fj23122 380 SVMPPMS 386 PF01344.15.ls: domain 2 of 6, from 341 to 386: score 75.3, E = 1.8e-19 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R +gv+vld+k+Yv+GG+dg ln+ve+Y+p+t+tW+ +p+m+ fj23122 341 RRLQFGVAVLDDKLYVVGGRDGlKTLNTVECYNPKTKTWSVMPPMS 386 -* fj23122 - - PF07646.5.fs: domain 2 of 6, from 341 to 386: score 37.4, E = 2.6e-09 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r + ++v+++klyvvGG+ +g ++++ +++p+t++W fj23122 341 RRLQFGVAVLDDKLYVVGGR--------DGLKTLNTVECYNPKTKTW 379 eklpalp<-* + +p++ fj23122 380 SVMPPMS 386 PF01344.15.fs: domain 3 of 6, from 388 to 433: score 55.9, E = 4.6e-15 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R+g gv+vl+g +Y++GG+dg ++ln+ve++Dp +W ++++m+ fj23122 388 HRHGLGVAVLEGPMYAVGGHDGwSYLNTVERWDPQARQWNFVATMS 433 -* fj23122 - - PF07646.5.ls: domain 3 of 6, from 388 to 433: score 20.4, E = 0.0062 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r++ ++v++g +y vGG+ +g ++++++ ++dp+ ++W fj23122 388 HRHGLGVAVLEGPMYAVGGH--------DGWSYLNTVERWDPQARQW 426 eklpalp<-* ++ + fj23122 427 NFVATMS 433 PF07646.5.fs: domain 3 of 6, from 388 to 433: score 18.5, E = 0.00036 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r++ ++v++g +y vGG+ +g ++++++ ++dp+ ++W fj23122 388 HRHGLGVAVLEGPMYAVGGH--------DGWSYLNTVERWDPQARQW 426 eklpalp<-* ++ + fj23122 427 NFVATMS 433 PF01344.15.ls: domain 3 of 6, from 388 to 433: score 57.9, E = 3e-14 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R+g gv+vl+g +Y++GG+dg ++ln+ve++Dp +W ++++m+ fj23122 388 HRHGLGVAVLEGPMYAVGGHDGwSYLNTVERWDPQARQWNFVATMS 433 -* fj23122 - - PF07646.5.ls: domain 4 of 6, from 435 to 480: score 31.9, E = 2.1e-06 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW pr+ + ++v+ gkly vGG+ +g++ + ++ ++dp tn+W fj23122 435 PRSTVGVAVLSGKLYAVGGR--------DGSSCLKSVECFDPHTNKW 473 eklpalp<-* + ++++ fj23122 474 TLCAQMS 480 PF01344.15.fs: domain 4 of 6, from 435 to 480: score 68.8, E = 9.9e-19 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< pRs +gv+vl gk+Y++GG+dg+++l+sve++Dp tn+Wt ++ m+ fj23122 435 PRSTVGVAVLSGKLYAVGGRDGsSCLKSVECFDPHTNKWTLCAQMS 480 -* fj23122 - - PF01344.15.ls: domain 4 of 6, from 435 to 480: score 70.9, E = 3.9e-18 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< pRs +gv+vl gk+Y++GG+dg+++l+sve++Dp tn+Wt ++ m+ fj23122 435 PRSTVGVAVLSGKLYAVGGRDGsSCLKSVECFDPHTNKWTLCAQMS 480 -* fj23122 - - PF07646.5.fs: domain 4 of 6, from 435 to 480: score 30.0, E = 2.6e-07 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW pr+ + ++v+ gkly vGG+ +g++ + ++ ++dp tn+W fj23122 435 PRSTVGVAVLSGKLYAVGGR--------DGSSCLKSVECFDPHTNKW 473 eklpalp<-* + ++++ fj23122 474 TLCAQMS 480 PF01344.15.fs: domain 5 of 6, from 482 to 533: score 53.9, E = 1.8e-14 *->pRsgagvvvldgkiYviGGydg.......qslnsvevYDpetntWtk +R g+gv++ +g++Y+iGG+d + ++ +++ +++ve+YDp+t+ Wt fj23122 482 RRGGVGVTTWNGLLYAIGGHDApasnltsRLSDCVERYDPKTDMWTA 528 lpsmp<-* ++sm+ fj23122 529 VASMS 533 PF07646.5.fs: domain 5 of 6, from 482 to 533: score 23.0, E = 2.1e-05 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r+++ +++++g ly +GG+ +++ + + +s+ + ++dp+t W fj23122 482 RRGGVGVTTWNGLLYAIGGH--DAPASNLTSRLSDCVERYDPKTDMW 526 eklpalp<-* + ++++ fj23122 527 TAVASMS 533 PF01344.15.ls: domain 5 of 6, from 482 to 533: score 55.9, E = 1.3e-13 *->pRsgagvvvldgkiYviGGydg.......qslnsvevYDpetntWtk +R g+gv++ +g++Y+iGG+d + ++ +++ +++ve+YDp+t+ Wt fj23122 482 RRGGVGVTTWNGLLYAIGGHDApasnltsRLSDCVERYDPKTDMWTA 528 lpsmp<-* ++sm+ fj23122 529 VASMS 533 PF07646.5.ls: domain 5 of 6, from 482 to 533: score 25.0, E = 0.00025 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r+++ +++++g ly +GG+ +++ + + +s+ + ++dp+t W fj23122 482 RRGGVGVTTWNGLLYAIGGH--DAPASNLTSRLSDCVERYDPKTDMW 526 eklpalp<-* + ++++ fj23122 527 TAVASMS 533 PF07646.5.fs: domain 6 of 6, from 535 to 580: score 38.3, E = 1.5e-09 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r + ++++g+kly vGG+ +g +++++ +dp+tn+W fj23122 535 SRDAVGVCLLGDKLYAVGGY--------DGQAYLNTVEAYDPQTNEW 573 eklpalp<-* + +++l+ fj23122 574 TQVAPLC 580 PF01344.15.fs: domain 6 of 6, from 535 to 580: score 63.4, E = 3.4e-17 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< R +gv+ l++k+Y++GGydg+ +ln+ve+YDp tn+Wt+++++ fj23122 535 SRDAVGVCLLGDKLYAVGGYDGqAYLNTVEAYDPQTNEWTQVAPLC 580 -* fj23122 - - PF01344.15.ls: domain 6 of 6, from 535 to 580: score 65.5, E = 1.6e-16 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< R +gv+ l++k+Y++GGydg+ +ln+ve+YDp tn+Wt+++++ fj23122 535 SRDAVGVCLLGDKLYAVGGYDGqAYLNTVEAYDPQTNEWTQVAPLC 580 -* fj23122 - - PF07646.5.ls: domain 6 of 6, from 535 to 580: score 40.1, E = 6.8e-09 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r + ++++g+kly vGG+ +g +++++ +dp+tn+W fj23122 535 SRDAVGVCLLGDKLYAVGGY--------DGQAYLNTVEAYDPQTNEW 573 eklpalp<-* + +++l+ fj23122 574 TQVAPLC 580 //